Department of Life Sciences and Systems Biology, University of Torino, Torino, Italy.
PLoS One. 2012;7(10):e48400. doi: 10.1371/journal.pone.0048400. Epub 2012 Oct 25.
[FeFe]-hydrogenases reversibly catalyse molecular hydrogen evolution by reduction of two protons. Proton supply to the catalytic site (H-cluster) is essential for enzymatic activity. Cysteine 298 is a highly conserved residue in all [FeFe]-hydrogenases; moreover C298 is structurally very close to the H-cluster and it is important for hydrogenase activity. Here, the function of C298 in catalysis was investigated in detail by means of site saturation mutagenesis, simultaneously studying the effect of C298 replacement with all other 19 amino acids and selecting for mutants with high retained activity. We demonstrated that efficient enzymatic turnover was maintained only when C298 was replaced by aspartic acid, despite the structural diversity between the two residues. Purified CaHydA C298D does not show any significant structural difference in terms of secondary structure and iron incorporation, demonstrating that the mutation does not affect the overall protein fold. C298D retains the hydrogen evolution activity with a decrease of k(cat) only by 2-fold at pH 8.0 and it caused a shift of the optimum pH from 8.0 to 7.0. Moreover, the oxygen inactivation rate was not affected demonstrating that the mutation does not influence O(2) diffusion to the active site or its reactivity with the H-cluster. Our results clearly demonstrate that, in order to maintain the catalytic efficiency and the high turnover number typical of [FeFe] hydrogenases, the highly conserved C298 can be replaced only by another ionisable residue with similar steric hindrance, giving evidence of its involvement in the catalytic function of [FeFe]-hydrogenases in agreement with an essential role in proton transfer to the active site.
[FeFe]-氢化酶通过还原两个质子可逆地催化分子氢的释放。质子向催化位点(H 簇)的供应对于酶活性是必不可少的。半胱氨酸 298 是所有 [FeFe]-氢化酶中高度保守的残基;此外,C298 与 H 簇结构非常接近,对于氢化酶活性很重要。在这里,通过定点饱和突变详细研究了 C298 在催化中的作用,同时研究了用所有其他 19 种氨基酸取代 C298 以及选择具有高保留活性的突变体的效果。我们证明,尽管两个残基的结构多样性很大,但只有当 C298 被天冬氨酸取代时,才能保持有效的酶周转。在 CaHydA C298D 中,尽管二级结构和铁掺入方面没有明显的结构差异,但纯化后的 C298D 不显示任何显著的结构差异,这表明突变不会影响整体蛋白折叠。C298D 保留了氢释放活性,只是在 pH 8.0 时 k(cat)降低了 2 倍,并且将最佳 pH 值从 8.0 移至 7.0。此外,氧失活速率不受影响,表明突变不会影响 O(2)向活性位点的扩散或其与 H 簇的反应性。我们的结果清楚地表明,为了保持 [FeFe]氢化酶的催化效率和高周转率,高度保守的 C298 只能被具有相似空间位阻的另一个可离子化残基取代,这证明了它参与了 [FeFe]-氢化酶的催化功能,与质子向活性位点转移的必需作用一致。