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四级结构对细菌细胞色素 c 过氧化物酶的影响:二聚化是否重要?

Impact of quaternary structure upon bacterial cytochrome c peroxidases: does homodimerization matter?

机构信息

Department of Chemistry, Boston University, 590 Commonwealth Avenue, Boston, MA 02215, USA.

出版信息

Biochemistry. 2012 Dec 18;51(50):10008-16. doi: 10.1021/bi301150n. Epub 2012 Dec 5.

Abstract

All known active forms of diheme bacterial cytochrome c peroxidase (bCcP) enzymes are described by a homodimeric state. Further, the majority of bCcPs reported display activity only when the high-potential electron transfer heme of the protein (Fe(H)) is reduced to the ferrous oxidation state. Reduction of Fe(H) results in a set of conformational changes allowing for the low-potential peroxidatic heme (Fe(L)) to adopt a high-spin, five-coordinate state that is capable of binding substrate. Here we examine the impact of dimerization upon the activity of the Shewanella oneidensis (So) bCcP by the preparation of single charge-reversal mutants at the dimer interface and use the resulting constructs to illustrate why dimerization is likely a requirement for activity in bCcPs. The E258K mutant is found to form a monomeric state in solution as characterized by size exclusion chromatography and analytical ultracentrifugation analyses. The resulting E258K monomer has an unfolding stability comparable to that of wild-type So bCcP and an activity that is only slightly diminished (k(cat)/K(m) = 23 × 10(6) M(-1) s(-1)). Spectroscopic and potentiometric analyses reveal that while the thermodynamic stability of the activated form of the enzyme is unchanged (characterized by the E(m) value of the Fe(H)(II)/Fe(H)(III) couple), the kinetic stability of the activated form of the enzyme has been greatly diminished upon generation of the monomer. Together, these data suggest a model in which dimerization of bCcP enzymes is required to stabilize the lifetime of the activated form of the enzyme against reoxidation of Fe(H) and deactivation of Fe(L).

摘要

所有已知的二血红素细菌细胞色素 c 过氧化物酶(bCcP)的活性形式都被描述为同源二聚体状态。此外,大多数报道的 bCcP 只有在蛋白质的高电位电子转移血红素(Fe(H))还原为亚铁氧化态时才显示活性。Fe(H)的还原导致一系列构象变化,使低电位过氧化物血红素(Fe(L))能够采用高自旋、五配位状态,从而能够结合底物。在这里,我们通过在二聚体界面制备单一电荷反转突变体来检查二聚化对希瓦氏菌(So)bCcP 活性的影响,并使用所得构建体来说明为什么二聚化可能是 bCcP 活性的要求。E258K 突变体被发现以单体形式存在于溶液中,这可以通过大小排阻色谱和分析超速离心分析来表征。所得的 E258K 单体具有与野生型 So bCcP 相当的解折叠稳定性,并且活性仅略有降低(k(cat)/K(m) = 23 × 10(6) M(-1) s(-1))。光谱和电位分析表明,虽然酶的激活形式的热力学稳定性保持不变(以 Fe(H)(II)/Fe(H)(III) 偶的 E(m)值为特征),但酶的激活形式的动力学稳定性在生成单体后大大降低。这些数据共同表明了一种模型,其中 bCcP 酶的二聚化对于稳定酶的激活形式的寿命以防止 Fe(H)的再氧化和 Fe(L)的失活是必需的。

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