Arbona Jean Michel, Aimé Jean-Pierre, Elezgaray Juan
CBMN, UMR 5248, CNRS, 2 rue Robert Escarpit, 33600 Pessac, France.
Phys Rev E Stat Nonlin Soft Matter Phys. 2012 Nov;86(5 Pt 1):051912. doi: 10.1103/PhysRevE.86.051912. Epub 2012 Nov 21.
We discuss generalizations of a previously published coarse-grained description [Mergell et al., Phys. Rev. E 68, 021911 (2003)] of double stranded DNA (dsDNA). The model is defined at the base-pair level and includes the electrostatic repulsion between neighbor helices. We show that the model reproduces mechanical and elastic properties of several DNA nanostructures (DNA origamis). We also show that electrostatic interactions are necessary to reproduce atomic force microscopy measurements on planar DNA origamis.
我们讨论了之前发表的关于双链DNA(dsDNA)的粗粒度描述[Mergell等人,《物理评论E》68,021911(2003)]的推广。该模型在碱基对水平上定义,并包括相邻螺旋之间的静电排斥。我们表明,该模型再现了几种DNA纳米结构(DNA折纸)的力学和弹性特性。我们还表明,静电相互作用对于再现平面DNA折纸的原子力显微镜测量结果是必要的。