• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

条形码技术的悖论?综合分子物种鉴定揭示了在难以捉摸的小型海洋蜗牛中有多个隐存谱系。

Barcoding against a paradox? Combined molecular species delineations reveal multiple cryptic lineages in elusive meiofaunal sea slugs.

机构信息

Mollusca Department, Bavarian State Collection of Zoology, Münchhausenstr,21, 81247, München, Germany.

出版信息

BMC Evol Biol. 2012 Dec 18;12:245. doi: 10.1186/1471-2148-12-245.

DOI:10.1186/1471-2148-12-245
PMID:23244441
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3573953/
Abstract

BACKGROUND

Many marine meiofaunal species are reported to have wide distributions, which creates a paradox considering their hypothesized low dispersal abilities. Correlated with this paradox is an especially high taxonomic deficit for meiofauna, partly related to a lower taxonomic effort and partly to a high number of putative cryptic species. Molecular-based species delineation and barcoding approaches have been advocated for meiofaunal biodiversity assessments to speed up description processes and uncover cryptic lineages. However, these approaches show sensitivity to sampling coverage (taxonomic and geographic) and the success rate has never been explored on mesopsammic Mollusca.

RESULTS

We collected the meiofaunal sea-slug Pontohedyle (Acochlidia, Heterobranchia) from 28 localities worldwide. With a traditional morphological approach, all specimens fall into two morphospecies. However, with a multi-marker genetic approach, we reveal multiple lineages that are reciprocally monophyletic on single and concatenated gene trees in phylogenetic analyses. These lineages are largely concordant with geographical and oceanographic parameters, leading to our primary species hypothesis (PSH). In parallel, we apply four independent methods of molecular based species delineation: General Mixed Yule Coalescent model (GMYC), statistical parsimony, Bayesian Species Delineation (BPP) and Automatic Barcode Gap Discovery (ABGD). The secondary species hypothesis (SSH) is gained by relying only on uncontradicted results of the different approaches ('minimum consensus approach'), resulting in the discovery of a radiation of (at least) 12 mainly cryptic species, 9 of them new to science, some sympatric and some allopatric with respect to ocean boundaries. However, the meiofaunal paradox still persists in some Pontohedyle species identified here with wide coastal and trans-archipelago distributions.

CONCLUSIONS

Our study confirms extensive, morphologically cryptic diversity among meiofauna and accentuates the taxonomic deficit that characterizes meiofauna research. We observe for Pontohedyle slugs a high degree of morphological simplicity and uniformity, which we expect might be a general rule for meiofauna. To tackle cryptic diversity in little explored and hard-to-sample invertebrate taxa, at present, a combined approach seems most promising, such as multi-marker-barcoding (i.e., molecular systematics using mitochondrial and nuclear markers and the criterion of reciprocal monophyly) combined with a minimum consensus approach across independent methods of molecular species delineation to define candidate species.

摘要

背景

许多海洋小型生物物种的分布范围很广,这与它们假定的低扩散能力形成了矛盾。这种矛盾与小型生物的分类学赤字特别高有关,部分原因是分类学上的努力较低,部分原因是假定的隐种数量较多。基于分子的物种划分和条形码方法已被用于小型生物多样性评估,以加快描述过程并发现隐种。然而,这些方法对采样覆盖范围(分类和地理)敏感,并且尚未在 mesopsammic Mollusca 上探索成功率。

结果

我们从全球 28 个地点采集了小型海洋海蛞蝓 Pontohedyle(Acochlidia,Heterobranchia)。通过传统的形态学方法,所有标本都归入两种形态种。然而,通过多标记基因方法,我们在单基因和基因树的串联系统发育分析中揭示了多个互为单系的谱系。这些谱系在很大程度上与地理和海洋参数一致,导致我们的主要物种假设(PSH)。同时,我们应用了四种独立的基于分子的物种划分方法:广义混合尤尔合并模型(GMYC)、统计简约法、贝叶斯物种鉴定(BPP)和自动条形码间隙发现(ABGD)。通过仅依赖于不同方法的无争议结果(“最小共识方法”)获得次要物种假设(SSH),导致发现了至少 12 种主要隐种的辐射,其中 9 种是新的科学发现,有些与海洋边界共生,有些与海洋边界隔离。然而,在我们在这里识别的一些 Pontohedyle 物种中,小型生物的悖论仍然存在,它们具有广泛的沿海和跨岛分布。

结论

我们的研究证实了小型生物中广泛存在的形态隐种多样性,并强调了小型生物研究的分类学赤字。我们观察到 Pontohedyle 蛞蝓具有高度的形态简单性和均匀性,我们预计这可能是小型生物的一般规则。为了解决未充分探索和难以采样的无脊椎动物类群中的隐种多样性,目前,多标记条形码(即使用线粒体和核标记的分子系统发育学和互为单系的标准)与独立的分子物种划分方法的最小共识方法相结合的综合方法似乎最有前途,以定义候选物种。

相似文献

1
Barcoding against a paradox? Combined molecular species delineations reveal multiple cryptic lineages in elusive meiofaunal sea slugs.条形码技术的悖论?综合分子物种鉴定揭示了在难以捉摸的小型海洋蜗牛中有多个隐存谱系。
BMC Evol Biol. 2012 Dec 18;12:245. doi: 10.1186/1471-2148-12-245.
2
Cryptic species in tropic sands--interactive 3D anatomy, molecular phylogeny and evolution of meiofaunal Pseudunelidae (Gastropoda, Acochlidia).热带沙滩中的隐存种——小型伪阿孔螺科(腹足纲,阿孔螺目)的交互式 3D 解剖结构、分子系统发育与演化。
PLoS One. 2011;6(8):e23313. doi: 10.1371/journal.pone.0023313. Epub 2011 Aug 31.
3
Singleton molecular species delimitation based on COI-5P barcode sequences revealed high cryptic/undescribed diversity for Chinese katydids (Orthoptera: Tettigoniidae).基于 COI-5P 条码序列的单分子种划分揭示了中国螽斯(直翅目:螽斯科)的高隐/未描述多样性。
BMC Evol Biol. 2019 Mar 14;19(1):79. doi: 10.1186/s12862-019-1404-5.
4
Evolution of microgastropods (Ellobioidea, Carychiidae): integrating taxonomic, phylogenetic and evolutionary hypotheses.微腹足类(Ellobioidea,Carychiidae)的演化:整合分类学、系统发育和演化假说。
BMC Evol Biol. 2013 Jan 23;13:18. doi: 10.1186/1471-2148-13-18.
5
How to describe a cryptic species? Practical challenges of molecular taxonomy.如何描述隐存种?分子分类学的实际挑战。
Front Zool. 2013 Sep 27;10(1):59. doi: 10.1186/1742-9994-10-59.
6
Integrative species delimitation in photosynthetic sea slugs reveals twenty candidate species in three nominal taxa studied for drug discovery, plastid symbiosis or biological control.综合物种界定在光合海蛞蝓中揭示了 20 种候选物种,这些物种在三个名义分类群中进行了研究,用于药物发现、质体共生或生物防治。
Mol Phylogenet Evol. 2013 Dec;69(3):1101-19. doi: 10.1016/j.ympev.2013.07.009. Epub 2013 Jul 19.
7
A multilocus view on Mediterranean aeolid nudibranchs (Mollusca): Systematics and cryptic diversity of Flabellinidae and Piseinotecidae.地中海海兔(软体动物)的多位点视角:裸鳃科和皮氏海兔科的系统学与隐秘多样性
Mol Phylogenet Evol. 2018 Jan;118:13-22. doi: 10.1016/j.ympev.2017.09.001. Epub 2017 Sep 6.
8
The necessity of DNA taxonomy to reveal cryptic diversity and spatial distribution of meiofauna, with a focus on Nemertea.DNA分类学对于揭示小型底栖动物的隐秘多样性和空间分布的必要性,重点关注纽形动物门。
PLoS One. 2014 Aug 5;9(8):e104385. doi: 10.1371/journal.pone.0104385. eCollection 2014.
9
Hydroids (Cnidaria, Hydrozoa) from Mauritanian Coral Mounds.来自毛里塔尼亚珊瑚丘的水螅虫纲动物(刺胞动物门,水螅虫纲)。
Zootaxa. 2020 Nov 16;4878(3):zootaxa.4878.3.2. doi: 10.11646/zootaxa.4878.3.2.
10
Two DNA barcodes and morphology for multi-method species delimitation in Bonnetina tarantulas (Araneae: Theraphosidae).两种DNA条形码和形态学用于缨毛蛛属狼蛛(蜘蛛目:捕鸟蛛科)的多方法物种界定
Mol Phylogenet Evol. 2016 Aug;101:176-193. doi: 10.1016/j.ympev.2016.05.003. Epub 2016 May 3.

引用本文的文献

1
Gaps and Data Ambiguities in DNA Reference Libraries: A Limiting Factor for Molecular-Based Biodiversity Assessments Using Annelids as a Case Study.DNA参考文库中的差距和数据模糊性:以环节动物为例,基于分子的生物多样性评估的限制因素
Ecol Evol. 2025 Jun 19;15(6):e71544. doi: 10.1002/ece3.71544. eCollection 2025 Jun.
2
Circumtropical distribution and cryptic species of the meiofaunal enteropneust Meioglossus (Harrimaniidae, Hemichordata).小型底栖肠鳃类动物梅氏肠鳃鳗(哈氏科,半索动物门)的环热带分布及隐存种
Sci Rep. 2024 Apr 23;14(1):9296. doi: 10.1038/s41598-024-57591-0.
3
Green armoured tardigrades (Echiniscidae: Viridiscus), including a new species from the Southern Nearctic, exemplify problems with tardigrade variability research.

本文引用的文献

1
A comparison of DNA-based methods for delimiting species in a Cretan land snail radiation reveals shortcomings of exclusively molecular taxonomy.对克里特岛陆生蜗牛辐射中用于界定物种的基于DNA的方法进行比较,揭示了单纯分子分类学的不足之处。
Cladistics. 2012 Jun;28(3):300-316. doi: 10.1111/j.1096-0031.2011.00382.x. Epub 2011 Nov 15.
2
Genetic Relationships (RAPD-PCR) Between Geographically Separated Populations of the "Cosmopolitan" Interstitial Polychaete Hesionides gohari (Hesionidae) and the Evolutionary Origin of the Freshwater Species Hesionides riegerorum.“世界性”间质多毛纲动物戈氏赫西昂虫(赫西昂虫科)地理隔离种群之间的遗传关系(随机扩增多态性DNA聚合酶链式反应)以及淡水物种里氏赫西昂虫的进化起源
Biol Bull. 1999 Apr;196(2):216-226. doi: 10.2307/1542567.
3
绿色装甲缓步动物(Echiniscidae: Viridiscus),包括来自南近极的一个新物种,是缓步动物变异性研究的问题的典型代表。
Sci Rep. 2023 Sep 28;13(1):16329. doi: 10.1038/s41598-023-40609-4.
4
Seven new "cryptic" species of Discodorididae (Mollusca, Gastropoda, Nudibranchia) from New Caledonia.来自新喀里多尼亚的七种新的隐鳃海牛科(软体动物门、腹足纲、裸鳃目)“隐秘”物种。
Zookeys. 2023 Mar 7;1152:45-95. doi: 10.3897/zookeys.1152.98258. eCollection 2023.
5
Ecological and Morphological Differentiation Among COI Haplotype Groups in the Plant Parasitic Nematode Species .植物寄生线虫物种中细胞色素氧化酶亚基I单倍型组间的生态与形态分化
J Nematol. 2022 May 11;54(1):20220009. doi: 10.2478/jofnem-2022-0009. eCollection 2022 Feb.
6
Cryptic Diversity in Resulting from Sequence-Based Species Delimitation Analyses.基于序列的物种界定分析产生的隐秘多样性。
Pathogens. 2021 Sep 10;10(9):1167. doi: 10.3390/pathogens10091167.
7
Looking at the Nudibranch Family Myrrhinidae (Gastropoda, Heterobranchia) from a Mitochondrial '2D Folding Structure' Point of View.从线粒体“二维折叠结构”视角看裸鳃亚目拟海牛科(腹足纲,异鳃亚纲)
Life (Basel). 2021 Jun 18;11(6):583. doi: 10.3390/life11060583.
8
Redescription of - a ubiquitous intertidal hoplonemertean found along the West Coast of North America.对——一种在北美洲西海岸潮间带普遍存在的刺吻纽虫的重新描述。
Zookeys. 2021 Apr 14;1031:1-17. doi: 10.3897/zookeys.1031.59361. eCollection 2021.
9
Remarkable Cryptic Diversity of spp. (Nematoda: Tylenchulidae) in Spain.西班牙 spp.(线虫纲:垫刃线虫科)的显著隐秘多样性。
Animals (Basel). 2021 Apr 18;11(4):1161. doi: 10.3390/ani11041161.
10
Colonization of macroalgal deposits by estuarine nematodes through air and potential for rafting inside algal structures.通过空气和在藻类结构内筏运,河口线虫在大型藻类沉积物上的定殖及潜力。
PLoS One. 2021 Apr 15;16(4):e0246723. doi: 10.1371/journal.pone.0246723. eCollection 2021.
Large-scale species delimitation method for hyperdiverse groups.大规模物种界定方法在高度多样化类群中的应用。
Mol Ecol. 2012 Jun;21(11):2671-91. doi: 10.1111/j.1365-294X.2012.05559.x. Epub 2012 Apr 11.
4
Patterns of diversity in soft-bodied meiofauna: dispersal ability and body size matter.软躯体后生动物多样性模式:扩散能力和体型很重要。
PLoS One. 2012;7(3):e33801. doi: 10.1371/journal.pone.0033801. Epub 2012 Mar 23.
5
Spatially structured populations with a low level of cryptic diversity in European marine Gastrotricha.具有低水平隐存多样性的欧洲海洋环节动物的空间结构种群。
Mol Ecol. 2012 Mar;21(5):1239-54. doi: 10.1111/j.1365-294X.2011.05421.x. Epub 2012 Jan 18.
6
Exploring diversity in cryptorhynchine weevils (Coleoptera) using distance-, character- and tree-based species delineation.利用基于距离、特征和树的物种划分方法探究隐头甲科象甲(鞘翅目)的多样性。
Mol Phylogenet Evol. 2012 Apr;63(1):1-14. doi: 10.1016/j.ympev.2011.11.018. Epub 2011 Dec 2.
7
Cryptic species in tropic sands--interactive 3D anatomy, molecular phylogeny and evolution of meiofaunal Pseudunelidae (Gastropoda, Acochlidia).热带沙滩中的隐存种——小型伪阿孔螺科(腹足纲,阿孔螺目)的交互式 3D 解剖结构、分子系统发育与演化。
PLoS One. 2011;6(8):e23313. doi: 10.1371/journal.pone.0023313. Epub 2011 Aug 31.
8
ABGD, Automatic Barcode Gap Discovery for primary species delimitation.ABGD,用于初步物种界定的自动条码间隙发现。
Mol Ecol. 2012 Apr;21(8):1864-77. doi: 10.1111/j.1365-294X.2011.05239.x. Epub 2011 Aug 29.
9
Evaluation of a bayesian coalescent method of species delimitation.贝叶斯支系发生法在物种界定中的评估。
Syst Biol. 2011 Dec;60(6):747-61. doi: 10.1093/sysbio/syr071. Epub 2011 Aug 29.
10
DNA barcoding of stylommatophoran land snails: a test of existing sequences.形态螺类陆地蜗牛 DNA 条形码:现有序列的检验。
Mol Ecol Resour. 2009 Jul;9(4):1092-101. doi: 10.1111/j.1755-0998.2009.02559.x. Epub 2009 Feb 17.