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Systematic use of universal 16S rRNA gene polymerase chain reaction (PCR) and sequencing for processing pleural effusions improves conventional culture techniques.对胸腔积液进行处理时,系统性应用通用16S rRNA基因聚合酶链反应(PCR)和测序可改进传统培养技术。
Medicine (Baltimore). 2012 Mar;91(2):103-110. doi: 10.1097/MD.0b013e31824dfdb0.
2
Role of universal 16S rRNA gene PCR and sequencing in diagnosis of prosthetic joint infection.通用 16S rRNA 基因 PCR 和测序在人工关节感染诊断中的作用。
J Clin Microbiol. 2012 Mar;50(3):583-9. doi: 10.1128/JCM.00170-11. Epub 2011 Dec 14.
3
Accuracy of bacterial DNA testing for central venous catheter-associated bloodstream infection in children with cancer.儿童癌症患者中心静脉导管相关性血流感染的细菌 DNA 检测的准确性。
Health Technol Assess. 2011 Feb;15(7):1-114. doi: 10.3310/hta15070.
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Clinical practice. Infection associated with prosthetic joints.临床实践。人工关节相关感染。
N Engl J Med. 2009 Aug 20;361(8):787-94. doi: 10.1056/NEJMcp0905029.
5
Clinical practice guidelines for the diagnosis and management of intravascular catheter-related infection: 2009 Update by the Infectious Diseases Society of America.血管内导管相关感染的诊断与管理临床实践指南:美国感染病学会2009年更新版
Clin Infect Dis. 2009 Jul 1;49(1):1-45. doi: 10.1086/599376.
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High prevalence of fastidious bacteria in 1520 cases of uveitis of unknown etiology.1520例病因不明葡萄膜炎中苛养菌的高流行率。
Medicine (Baltimore). 2008 May;87(3):167-176. doi: 10.1097/MD.0b013e31817b0747.
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Sonication of removed hip and knee prostheses for diagnosis of infection.对取出的髋关节和膝关节假体进行超声处理以诊断感染。
N Engl J Med. 2007 Aug 16;357(7):654-63. doi: 10.1056/NEJMoa061588.
8
Molecular diagnosis of infective endocarditis by real-time broad-range polymerase chain reaction (PCR) and sequencing directly from heart valve tissue.通过实时宽范围聚合酶链反应(PCR)并直接从心脏瓣膜组织进行测序对感染性心内膜炎进行分子诊断。
Medicine (Baltimore). 2007 Jul;86(4):195-202. doi: 10.1097/MD.0b013e31811f44ec.
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Diagnosis of periprosthetic infection.人工关节周围感染的诊断
J Bone Joint Surg Am. 2006 Apr;88(4):869-82. doi: 10.2106/JBJS.E.01149.
10
Systematic 16S rRNA gene sequencing of atypical clinical isolates identified 27 new bacterial species associated with humans.对非典型临床分离株进行的系统性16S rRNA基因测序鉴定出27种与人类相关的新细菌物种。
J Clin Microbiol. 2004 May;42(5):2197-202. doi: 10.1128/JCM.42.5.2197-2202.2004.

采用通用 16S rRNA 基因 PCR 作为诊断静脉置管相关血流感染的工具。

Use of universal 16S rRNA gene PCR as a diagnostic tool for venous access port-related bloodstream infections.

机构信息

Department of Clinical Microbiology and Infectious Diseases, Hospital General Universitario Gregorio Marañón, Instituto de Investigación Sanitaria del Hospital Gregorio Marañón, Universidad Complutense, Madrid, Spain.

出版信息

J Clin Microbiol. 2013 Mar;51(3):799-804. doi: 10.1128/JCM.02414-12. Epub 2012 Dec 19.

DOI:10.1128/JCM.02414-12
PMID:23254136
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3592034/
Abstract

Amplification of the universal 16S rRNA gene using PCR has improved the diagnostic yield of microbiological samples. However, no data have been reported on the reliability of this technique with venous access ports (VAPs). We assessed the utility of 16S rRNA PCR for the prediction of VAP-related bloodstream infection (VAP-RBSI). During a 2-year period, we prospectively received all VAPs removed by interventional radiologists. PCR and conventional cultures were performed using samples from the different VAP sites. We compared the results of PCR with those of conventional culture for patients with confirmed VAP-RBSI. We collected 219 VAPs from 219 patients. Conventional VAP culture revealed 15 episodes of VAP-RBSI. PCR revealed a further 4 episodes in patients undergoing antibiotic therapy which would have gone undetected using conventional culture. Moreover, it had a negative predictive value of 97.8% for the prediction of VAP-RBSI when it was performed using biofilm from the internal surface of the port. In conclusion, universal 16S rRNA PCR performed with samples from the inside of VAPs proved to be a useful tool for the diagnosis of VAP-RBSI. It increased detection of VAP-RBSI episodes by 21.1% in patients undergoing antibiotic therapy whose episodes would have gone undetected using conventional culture. Therefore, we propose a new application of 16S rRNA PCR as a useful tool for the diagnosis of VAP-RBSI in patients receiving antibiotic therapy.

摘要

采用 PCR 扩增通用 16S rRNA 基因提高了微生物样本的诊断产量。然而,目前尚无关于该技术在静脉置管相关血流感染(VAP-RBSI)方面可靠性的数据。我们评估了 16S rRNA PCR 在预测 VAP 相关血流感染(VAP-RBSI)中的作用。在 2 年期间,我们前瞻性地接收了所有由介入放射科医生取出的 VAP。采用来自不同 VAP 部位的样本进行 PCR 和传统培养。我们将 PCR 结果与确诊为 VAP-RBSI 患者的传统培养结果进行了比较。我们收集了 219 名 VAP 患者的 219 个 VAP。传统 VAP 培养显示有 15 例 VAP-RBSI。在接受抗生素治疗的患者中,PCR 发现了另外 4 例,而这些病例如果使用传统培养则无法检测到。此外,当使用端口内部表面的生物膜进行时,它对 VAP-RBSI 的预测具有 97.8%的阴性预测值。总之,采用 VAP 内部样本进行的通用 16S rRNA PCR 被证明是诊断 VAP-RBSI 的有用工具。在接受抗生素治疗的患者中,它将 VAP-RBSI 病例的检出率提高了 21.1%,这些病例如果使用传统培养则无法检测到。因此,我们提出了 16S rRNA PCR 的新应用,作为接受抗生素治疗的患者 VAP-RBSI 诊断的有用工具。