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本文引用的文献

1
An integrated encyclopedia of DNA elements in the human genome.人类基因组中 DNA 元件的综合百科全书。
Nature. 2012 Sep 6;489(7414):57-74. doi: 10.1038/nature11247.
2
Genome-wide association study confirming association of HLA-DP with protection against chronic hepatitis B and viral clearance in Japanese and Korean.全基因组关联研究确认 HLA-DP 与日本和韩国慢性乙型肝炎的保护和病毒清除有关。
PLoS One. 2012;7(6):e39175. doi: 10.1371/journal.pone.0039175. Epub 2012 Jun 21.
3
Genome-wide genetic associations with IFNγ response to smallpox vaccine.全基因组遗传关联与天花疫苗对 IFNγ 的反应。
Hum Genet. 2012 Sep;131(9):1433-51. doi: 10.1007/s00439-012-1179-x. Epub 2012 Jun 3.
4
Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.全基因组分析与天花疫苗接种者细胞因子反应相关的多态性。
Hum Genet. 2012 Sep;131(9):1403-21. doi: 10.1007/s00439-012-1174-2. Epub 2012 May 19.
5
Genome-wide association studies of tuberculosis in Asians identify distinct at-risk locus for young tuberculosis.亚洲人结核病全基因组关联研究确定了青年结核病的独特风险位点。
J Hum Genet. 2012 Jun;57(6):363-7. doi: 10.1038/jhg.2012.35. Epub 2012 May 3.
6
Genome-wide association study of antibody response to smallpox vaccine.全基因组关联研究抗体对天花疫苗的反应。
Vaccine. 2012 Jun 13;30(28):4182-9. doi: 10.1016/j.vaccine.2012.04.055. Epub 2012 Apr 25.
7
Common variants at 11p13 are associated with susceptibility to tuberculosis.11p13 常见变异与结核病易感性相关。
Nat Genet. 2012 Feb 5;44(3):257-9. doi: 10.1038/ng.1080.
8
A genome wide association study of pulmonary tuberculosis susceptibility in Indonesians.一项针对印度尼西亚人肺结核易感性的全基因组关联研究。
BMC Med Genet. 2012 Jan 13;13:5. doi: 10.1186/1471-2350-13-5.
9
Evolutionary genetic dissection of human interferons.人类干扰素的进化遗传剖析。
J Exp Med. 2011 Dec 19;208(13):2747-59. doi: 10.1084/jem.20111680. Epub 2011 Dec 12.
10
Identification of two new loci at IL23R and RAB32 that influence susceptibility to leprosy.鉴定出影响麻风病易感性的两个新的 IL23R 和 RAB32 基因座。
Nat Genet. 2011 Oct 23;43(12):1247-51. doi: 10.1038/ng.973.

人类多样性的全基因组视角及其在传染病中的意义。

A genome-wide perspective of human diversity and its implications in infectious disease.

机构信息

Institut Pasteur, Unit of Human Evolutionary Genetics, Department of Genomes and Genetics, F-75015 Paris, France.

出版信息

Cold Spring Harb Perspect Med. 2013 Jan 1;3(1):a012450. doi: 10.1101/cshperspect.a012450.

DOI:10.1101/cshperspect.a012450
PMID:23284079
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3530038/
Abstract

Progress in genomic technologies, such as DNA arrays and next-generation sequencing, is allowing systematic characterization of the degree of human genetic variation at the scale of individual genomes. Public efforts, such as the International HapMap Project and the 1000 Genomes Project, have provided a realistic picture of the levels of genetic diversity in individuals and populations. These genomic techniques are also making it possible to evaluate the contribution of host genetic diversity to differences in susceptibility to both rare and common infectious diseases. Recent studies have revealed the power of whole-exome sequencing for dissecting the immunological mechanisms underlying the pathogenesis of severe, rare infectious diseases. Likewise, genome-wide association studies on common viral, bacterial, and parasitic infections have shed light on the host genetic basis of susceptibility to infectious diseases and, in some cases, of disease progression and drug responses.

摘要

基因组技术的进步,如 DNA 芯片和新一代测序技术,使得在个体基因组规模上系统地描述人类遗传变异程度成为可能。国际人类基因组单体型图计划和 1000 基因组计划等公共努力,为个体和人群的遗传多样性水平提供了现实的图景。这些基因组技术也使得评估宿主遗传多样性对罕见和常见传染病易感性差异的贡献成为可能。最近的研究揭示了全外显子组测序在剖析严重罕见传染病发病机制中的免疫学机制方面的强大功能。同样,对常见病毒、细菌和寄生虫感染的全基因组关联研究揭示了宿主对传染病易感性的遗传基础,在某些情况下还揭示了疾病进展和药物反应的遗传基础。