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基因组方法在微生物生物勘探中的新兴趋势。

Emerging trends in genomic approaches for microbial bioprospecting.

机构信息

Department of Applied Microbiology, Sri Padmavati Women's University, Tirupati, India.

出版信息

OMICS. 2013 Feb;17(2):61-70. doi: 10.1089/omi.2012.0082. Epub 2013 Jan 11.

Abstract

Microorganisms constitute two out of the three domains of life on earth. They exhibit vast biodiversity and metabolic versatility. This enables the microorganisms to inhabit and thrive in even the most extreme environmental conditions, making them all pervading. The magnitude of biodiversity observed among microorganisms substantially supersedes that exhibited by the eukaryotes. These characteristics make the microbial world a very lucrative and inexhaustible resource for prospecting novel bioactive molecules. Despite their vast potential, over 99% of the microbial world still remains to be explored. The primary reason for this is that the culture-dependent methods used in the laboratories are grossly insufficient, as they support the growth of under 1% of the microorganisms found in nature. This limitation necessitated the development of techniques to circumvent culture dependency and gain access to the outstanding majority of the microorganisms. The development of culture-independent techniques has essentially reshaped the study of microbial diversity and community dynamics. Application of genomic and metagenomic approaches is contributing substantially towards characterization of the real microbial diversity. The amenability of these techniques to high throughput has opened the doors to explore the vast number of "uncultivable" microbial forms in substantially lesser time. The present article provides an update on the recent technological advances and emerging trends in exploring microbial community.

摘要

微生物构成了地球上生命的三个域中的两个。它们表现出广泛的生物多样性和代谢多功能性。这使微生物能够栖息和在即使是最极端的环境条件下茁壮成长,使它们无处不在。微生物中观察到的生物多样性的规模大大超过了真核生物所表现出的规模。这些特征使微生物世界成为探索新型生物活性分子的非常有利和取之不尽的资源。尽管它们具有巨大的潜力,但仍有超过 99%的微生物世界有待探索。主要原因是实验室中使用的依赖培养的方法严重不足,因为它们只能支持自然界中发现的微生物的 1%以下的生长。这种局限性需要开发技术来规避培养依赖性并获得绝大多数微生物。非依赖培养技术的发展从本质上改变了微生物多样性和群落动态的研究。基因组和宏基因组方法的应用在很大程度上有助于对真正的微生物多样性进行特征描述。这些技术对高通量的适应性为在更短的时间内探索大量“不可培养”的微生物形式开辟了道路。本文提供了关于探索微生物群落的最新技术进展和新兴趋势的最新信息。

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