• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

相似文献

1
Human systems immunology: hypothesis-based modeling and unbiased data-driven approaches.人体系统免疫学:基于假设的建模和无偏数据驱动方法。
Semin Immunol. 2013 Oct 31;25(3):193-200. doi: 10.1016/j.smim.2012.11.003. Epub 2013 Jan 29.
2
Third-Kind Encounters in Biomedicine: Immunology Meets Mathematics and Informatics to Become Quantitative and Predictive.生物医学中的第三次相遇:免疫学与数学和信息学相结合,走向定量与预测。
Methods Mol Biol. 2016;1386:135-79. doi: 10.1007/978-1-4939-3283-2_9.
3
Systems immunology: just getting started.系统免疫学:刚刚起步。
Nat Immunol. 2017 Jun 20;18(7):725-732. doi: 10.1038/ni.3768.
4
A global "imaging'' view on systems approaches in immunology.从“成像”角度看免疫学中的系统方法。
Eur J Immunol. 2012 Dec;42(12):3116-25. doi: 10.1002/eji.201242508.
5
A systems immunology approach to plasmacytoid dendritic cell function in cytopathic virus infections.系统免疫学法研究致细胞病变病毒感染中浆细胞样树突状细胞的功能。
PLoS Pathog. 2010 Jul 22;6(7):e1001017. doi: 10.1371/journal.ppat.1001017.
6
Systems immunology: a survey of modeling formalisms, applications and simulation tools.系统免疫学:建模形式主义、应用和模拟工具的调查。
Immunol Res. 2012 Sep;53(1-3):251-65. doi: 10.1007/s12026-012-8305-7.
7
How Can Systems Biology Test Principles and Tools Using Immune Cells as a Model?系统生物学如何利用免疫细胞模型来检验原理和工具?
Cell Syst. 2018 Feb 28;6(2):146-148. doi: 10.1016/j.cels.2018.02.005.
8
Systems Approaches towards Molecular Profiling of Human Immunity.系统方法在人类免疫的分子剖析中的应用。
Trends Immunol. 2016 Jan;37(1):53-67. doi: 10.1016/j.it.2015.11.006. Epub 2015 Dec 5.
9
Solving Immunology?解决免疫学问题?
Trends Immunol. 2017 Feb;38(2):116-127. doi: 10.1016/j.it.2016.11.006. Epub 2016 Dec 13.
10
What Can Immunologists Learn from Systems Approaches?免疫学家能从系统方法中学到什么?
Trends Immunol. 2018 Mar;39(3):163-166. doi: 10.1016/j.it.2018.01.002. Epub 2018 Feb 21.

引用本文的文献

1
Population dynamics modeling reveals that myeloid bias involves both HSC differentiation and progenitor proliferation biases.种群动态建模显示,髓系偏向涉及造血干细胞分化和祖细胞增殖偏向。
Blood. 2025 Mar 20;145(12):1293-1308. doi: 10.1182/blood.2024025598.
2
Spatiotemporal metabolomic approaches to the cancer-immunity panorama: a methodological perspective.时空代谢组学方法研究癌症免疫全景:一种方法学视角。
Mol Cancer. 2024 Sep 18;23(1):202. doi: 10.1186/s12943-024-02113-9.
3
Network-based integrative multi-omics approach reveals biosignatures specific to COVID-19 disease phases.基于网络的整合多组学方法揭示了新冠病毒疾病不同阶段特有的生物标志物。
Front Mol Biosci. 2024 Jul 8;11:1393240. doi: 10.3389/fmolb.2024.1393240. eCollection 2024.
4
Leveraging Structured Biological Knowledge for Counterfactual Inference: A Case Study of Viral Pathogenesis.利用结构化生物学知识进行反事实推理:病毒致病机制的案例研究
IEEE Trans Big Data. 2021 Jan 18;7(1):25-37. doi: 10.1109/TBDATA.2021.3050680. eCollection 2021 Mar 1.
5
Towards systems immunology of critical illness at scale: from single cell 'omics to digital twins.迈向规模化的危重症系统免疫学:从单细胞组学到数字孪生。
Trends Immunol. 2023 May;44(5):345-355. doi: 10.1016/j.it.2023.03.004. Epub 2023 Mar 24.
6
Mechanistic model for booster doses effectiveness in healthy, cancer, and immunosuppressed patients infected with SARS-CoV-2.用于评估健康、癌症和免疫抑制患者感染 SARS-CoV-2 时加强针效果的机制模型。
Proc Natl Acad Sci U S A. 2023 Jan 17;120(3):e2211132120. doi: 10.1073/pnas.2211132120. Epub 2023 Jan 9.
7
Single cell immune profiling of dengue virus patients reveals intact immune responses to Zika virus with enrichment of innate immune signatures.对登革热病毒患者的单细胞免疫分析显示,对寨卡病毒存在完整的免疫反应,并富集固有免疫特征。
PLoS Negl Trop Dis. 2020 Mar 9;14(3):e0008112. doi: 10.1371/journal.pntd.0008112. eCollection 2020 Mar.
8
Distributed Adaptive Search in T Cells: Lessons From Ants.T 细胞中的分布式自适应搜索:蚂蚁的启示。
Front Immunol. 2019 Jun 13;10:1357. doi: 10.3389/fimmu.2019.01357. eCollection 2019.
9
Comprehensive innate immune profiling of chikungunya virus infection in pediatric cases.小儿基孔肯雅热病毒感染的全面固有免疫分析。
Mol Syst Biol. 2018 Aug 27;14(8):e7862. doi: 10.15252/msb.20177862.
10
Introduction to modeling viral infections and immunity.病毒感染与免疫建模简介。
Immunol Rev. 2018 Sep;285(1):5-8. doi: 10.1111/imr.12700.

本文引用的文献

1
Potassium channel KIR4.1 as an immune target in multiple sclerosis.钾通道 KIR4.1 作为多发性硬化症的免疫靶点。
N Engl J Med. 2012 Jul 12;367(2):115-23. doi: 10.1056/NEJMoa1110740.
2
Modeling within-host dynamics of influenza virus infection including immune responses.建立包含免疫反应的流感病毒感染个体内动力学模型。
PLoS Comput Biol. 2012;8(6):e1002588. doi: 10.1371/journal.pcbi.1002588. Epub 2012 Jun 28.
3
Cross-species transcriptional network analysis defines shared inflammatory responses in murine and human lupus nephritis.跨物种转录网络分析定义了小鼠和人类狼疮肾炎中的共享炎症反应。
J Immunol. 2012 Jul 15;189(2):988-1001. doi: 10.4049/jimmunol.1103031. Epub 2012 Jun 20.
4
Modelling deuterium labelling of lymphocytes with temporal and/or kinetic heterogeneity.建立具有时间和/或动力学异质性的氘标记淋巴细胞模型。
J R Soc Interface. 2012 Sep 7;9(74):2191-200. doi: 10.1098/rsif.2012.0149. Epub 2012 Apr 18.
5
Computational approaches for analyzing information flow in biological networks.计算方法在生物网络信息流分析中的应用。
Sci Signal. 2012 Apr 17;5(220):re1. doi: 10.1126/scisignal.2002961.
6
Strategies to discover regulatory circuits of the mammalian immune system.发现哺乳动物免疫系统调控回路的策略。
Nat Rev Immunol. 2011 Nov 18;11(12):873-80. doi: 10.1038/nri3109.
7
Systems vaccinology: learning to compute the behavior of vaccine induced immunity.系统疫苗学:学习计算疫苗诱导免疫的行为。
Wiley Interdiscip Rev Syst Biol Med. 2012 Mar-Apr;4(2):193-205. doi: 10.1002/wsbm.163. Epub 2011 Oct 19.
8
Temporal dynamics of host molecular responses differentiate symptomatic and asymptomatic influenza a infection.宿主分子反应的时间动态可区分有症状和无症状的甲型流感感染。
PLoS Genet. 2011 Aug;7(8):e1002234. doi: 10.1371/journal.pgen.1002234. Epub 2011 Aug 25.
9
Fitness costs and diversity of the cytotoxic T lymphocyte (CTL) response determine the rate of CTL escape during acute and chronic phases of HIV infection.在 HIV 感染的急性和慢性阶段,细胞毒性 T 淋巴细胞(CTL)反应的适应性成本和多样性决定了 CTL 逃逸的速度。
J Virol. 2011 Oct;85(20):10518-28. doi: 10.1128/JVI.00655-11. Epub 2011 Aug 10.
10
Systems biology of vaccination for seasonal influenza in humans.人类季节性流感疫苗接种的系统生物学。
Nat Immunol. 2011 Jul 10;12(8):786-95. doi: 10.1038/ni.2067.

人体系统免疫学:基于假设的建模和无偏数据驱动方法。

Human systems immunology: hypothesis-based modeling and unbiased data-driven approaches.

机构信息

Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA.

出版信息

Semin Immunol. 2013 Oct 31;25(3):193-200. doi: 10.1016/j.smim.2012.11.003. Epub 2013 Jan 29.

DOI:10.1016/j.smim.2012.11.003
PMID:23375135
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3836867/
Abstract

Systems immunology is an emerging paradigm that aims at a more systematic and quantitative understanding of the immune system. Two major approaches have been utilized to date in this field: unbiased data-driven modeling to comprehensively identify molecular and cellular components of a system and their interactions; and hypothesis-based quantitative modeling to understand the operating principles of a system by extracting a minimal set of variables and rules underlying them. In this review, we describe applications of the two approaches to the study of viral infections and autoimmune diseases in humans, and discuss possible ways by which these two approaches can synergize when applied to human immunology.

摘要

系统免疫学是一种新兴的范式,旨在更系统和定量地理解免疫系统。迄今为止,该领域采用了两种主要方法:无偏数据驱动建模,以全面识别系统的分子和细胞成分及其相互作用;基于假设的定量建模,通过提取系统背后的最小变量集和规则来理解系统的工作原理。在这篇综述中,我们描述了这两种方法在人类病毒感染和自身免疫性疾病研究中的应用,并讨论了当应用于人类免疫学时,这两种方法可以协同作用的可能途径。