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系统疫苗学:学习计算疫苗诱导免疫的行为。

Systems vaccinology: learning to compute the behavior of vaccine induced immunity.

机构信息

Emory Vaccine Center, Yerkes National Primate Research Center, Atlanta, GA, USA.

出版信息

Wiley Interdiscip Rev Syst Biol Med. 2012 Mar-Apr;4(2):193-205. doi: 10.1002/wsbm.163. Epub 2011 Oct 19.

DOI:10.1002/wsbm.163
PMID:22012654
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3288517/
Abstract

The goal of systems biology is to access and integrate information about the parts (e.g., genes, proteins, cells) of a biological system with a view to computing and predicting the behavior of the system. The past decade has witnessed technological revolutions in the capacity to make high throughput measurements about the behavior of genes, proteins, and cells. Such technologies are widely used in biological research and in medicine, such as toward prognosis and therapy response prediction in cancer patients. More recently, systems biology is being applied to vaccinology, with the goal of: (1) understanding the mechanisms by which vaccines stimulate protective immunity, and (2) predicting the immunogenicity or efficacy of vaccines. Here, we review the recent advances in this area, and highlight the biological and computational challenges posed.

摘要

系统生物学的目标是获取和整合生物系统各部分(如基因、蛋白质、细胞)的信息,以便计算和预测系统的行为。过去十年见证了在基因、蛋白质和细胞行为的高通量测量能力方面的技术革命。此类技术在生物学研究和医学中得到广泛应用,例如在癌症患者的预后和治疗反应预测方面。最近,系统生物学正在被应用于疫苗学,其目标是:(1)了解疫苗刺激保护性免疫的机制,以及(2)预测疫苗的免疫原性或疗效。在这里,我们综述了该领域的最新进展,并强调了所提出的生物学和计算方面的挑战。

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Systems vaccinology: learning to compute the behavior of vaccine induced immunity.系统疫苗学:学习计算疫苗诱导免疫的行为。
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Front Immunol. 2023 Mar 29;14:1133781. doi: 10.3389/fimmu.2023.1133781. eCollection 2023.
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The Immune Signatures data resource, a compendium of systems vaccinology datasets.免疫特征数据资源,系统疫苗学数据集纲要。
Sci Data. 2022 Oct 20;9(1):635. doi: 10.1038/s41597-022-01714-7.
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Integrative Metabolomics to Identify Molecular Signatures of Responses to Vaccines and Infections.

本文引用的文献

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Systems biology of vaccination for seasonal influenza in humans.人类季节性流感疫苗接种的系统生物学。
Nat Immunol. 2011 Jul 10;12(8):786-95. doi: 10.1038/ni.2067.
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Immunological mechanisms of vaccination.疫苗接种的免疫学机制。
Nat Immunol. 2011 Jun;12(6):509-17. doi: 10.1038/ni.2039.
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Systems vaccinology.系统疫苗学。
整合代谢组学用于识别对疫苗和感染反应的分子特征
Metabolites. 2020 Nov 30;10(12):492. doi: 10.3390/metabo10120492.
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Blood transcriptome profile induced by an efficacious vaccine formulated with salivary antigens from cattle ticks.由用牛蜱唾液抗原配制的有效疫苗诱导的血液转录组概况。
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Assessing the Impact of Sample Heterogeneity on Transcriptome Analysis of Human Diseases Using MDP Webtool.使用MDP网络工具评估样本异质性对人类疾病转录组分析的影响。
Front Genet. 2019 Oct 24;10:971. doi: 10.3389/fgene.2019.00971. eCollection 2019.
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OMIC Technologies and Vaccine Development: From the Identification of Vulnerable Individuals to the Formulation of Invulnerable Vaccines.OMIC 技术与疫苗开发:从鉴定易感个体到制定不易感疫苗。
J Immunol Res. 2019 Apr 28;2019:8732191. doi: 10.1155/2019/8732191. eCollection 2019.
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Innate gene signature distinguishes humoral versus cytotoxic responses to influenza vaccination.先天基因特征区分流感疫苗接种后的体液免疫反应与细胞毒性反应。
J Clin Invest. 2019 Mar 7;129(5):1960-1971. doi: 10.1172/JCI125372. Print 2019 May 1.
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AS03-Adjuvanted H5N1 Avian Influenza Vaccine Modulates Early Innate Immune Signatures in Human Peripheral Blood Mononuclear Cells.AS03 佐剂的 H5N1 禽流感疫苗可调节人外周血单个核细胞中的早期先天免疫特征。
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Computational modeling of mammalian signaling networks.哺乳动物信号网络的计算建模。
Wiley Interdiscip Rev Syst Biol Med. 2010 Mar-Apr;2(2):194-209. doi: 10.1002/wsbm.52.
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Genome-scale metabolic networks.基因组规模的代谢网络。
Wiley Interdiscip Rev Syst Biol Med. 2009 Nov-Dec;1(3):285-297. doi: 10.1002/wsbm.37.
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An interferon-inducible neutrophil-driven blood transcriptional signature in human tuberculosis.人结核分枝杆菌感染中干扰素诱导的中性粒细胞驱动的血液转录特征。
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The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models.《基因芯片质量控制(MAQC)-II 研究:基于基因芯片的预测模型的开发和验证的常见实践》。
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Assessing the human immune system through blood transcriptomics.通过血液转录组学评估人类免疫系统。
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A human B-cell interactome identifies MYB and FOXM1 as master regulators of proliferation in germinal centers.人类 B 细胞相互作用组鉴定出 MYB 和 FOXM1 作为生发中心增殖的主要调节因子。
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Cell type-specific gene expression differences in complex tissues.复杂组织中的细胞类型特异性基因表达差异。
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