第三届DBCLS生物黑客松：利用语义网技术改善生命科学数据整合
The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies.
作者信息
Katayama Toshiaki, Wilkinson Mark D, Micklem Gos, Kawashima Shuichi, Yamaguchi Atsuko, Nakao Mitsuteru, Yamamoto Yasunori, Okamoto Shinobu, Oouchida Kenta, Chun Hong-Woo, Aerts Jan, Afzal Hammad, Antezana Erick, Arakawa Kazuharu, Aranda Bruno, Belleau Francois, Bolleman Jerven, Bonnal Raoul Jp, Chapman Brad, Cock Peter Ja, Eriksson Tore, Gordon Paul Mk, Goto Naohisa, Hayashi Kazuhiro, Horn Heiko, Ishiwata Ryosuke, Kaminuma Eli, Kasprzyk Arek, Kawaji Hideya, Kido Nobuhiro, Kim Young Joo, Kinjo Akira R, Konishi Fumikazu, Kwon Kyung-Hoon, Labarga Alberto, Lamprecht Anna-Lena, Lin Yu, Lindenbaum Pierre, McCarthy Luke, Morita Hideyuki, Murakami Katsuhiko, Nagao Koji, Nishida Kozo, Nishimura Kunihiro, Nishizawa Tatsuya, Ogishima Soichi, Ono Keiichiro, Oshita Kazuki, Park Keun-Joon, Prins Pjotr, Saito Taro L, Samwald Matthias, Satagopam Venkata P, Shigemoto Yasumasa, Smith Richard, Splendiani Andrea, Sugawara Hideaki, Taylor James, Vos Rutger A, Withers David, Yamasaki Chisato, Zmasek Christian M, Kawamoto Shoko, Okubo Kosaku, Asai Kiyoshi, Takagi Toshihisa
机构信息
Database Center for Life Science, Research Organization of Information and Systems, 2-11-16, Yayoi, Bunkyo-ku, Tokyo, 113-0032, Japan.
出版信息
J Biomed Semantics. 2013 Feb 11;4(1):6. doi: 10.1186/2041-1480-4-6.
BACKGROUND
BioHackathon 2010 was the third in a series of meetings hosted by the Database Center for Life Sciences (DBCLS) in Tokyo, Japan. The overall goal of the BioHackathon series is to improve the quality and accessibility of life science research data on the Web by bringing together representatives from public databases, analytical tool providers, and cyber-infrastructure researchers to jointly tackle important challenges in the area of in silico biological research.
RESULTS
The theme of BioHackathon 2010 was the 'Semantic Web', and all attendees gathered with the shared goal of producing Semantic Web data from their respective resources, and/or consuming or interacting those data using their tools and interfaces. We discussed on topics including guidelines for designing semantic data and interoperability of resources. We consequently developed tools and clients for analysis and visualization.
CONCLUSION
We provide a meeting report from BioHackathon 2010, in which we describe the discussions, decisions, and breakthroughs made as we moved towards compliance with Semantic Web technologies - from source provider, through middleware, to the end-consumer.
背景
2010年生物黑客马拉松是日本东京生命科学数据库中心（DBCLS）主办的系列会议中的第三次会议。生物黑客马拉松系列会议的总体目标是通过召集公共数据库代表、分析工具提供商和网络基础设施研究人员，共同应对计算机生物学研究领域的重要挑战，提高网络上生命科学研究数据的质量和可访问性。
结果
2010年生物黑客马拉松的主题是“语义网”，所有与会者齐聚一堂，共同目标是从各自的资源中生成语义网数据，和/或使用他们的工具和接口消费或交互这些数据。我们讨论了包括语义数据设计指南和资源互操作性在内的主题。我们因此开发了用于分析和可视化的工具及客户端。
结论
我们提供了一份2010年生物黑客马拉松的会议报告，其中描述了我们在朝着符合语义网技术发展过程中所进行的讨论、做出的决策和取得的突破——从源提供者到中间件，再到最终用户。
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