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将连接组学与行为联系起来:秀丽隐杆线虫趋触性的神经解剖模型集合。

Connecting a connectome to behavior: an ensemble of neuroanatomical models of C. elegans klinotaxis.

机构信息

Cognitive Science Program, Indiana University, Bloomington, Indiana, USA.

出版信息

PLoS Comput Biol. 2013;9(2):e1002890. doi: 10.1371/journal.pcbi.1002890. Epub 2013 Feb 7.

Abstract

Increased efforts in the assembly and analysis of connectome data are providing new insights into the principles underlying the connectivity of neural circuits. However, despite these considerable advances in connectomics, neuroanatomical data must be integrated with neurophysiological and behavioral data in order to obtain a complete picture of neural function. Due to its nearly complete wiring diagram and large behavioral repertoire, the nematode worm Caenorhaditis elegans is an ideal organism in which to explore in detail this link between neural connectivity and behavior. In this paper, we develop a neuroanatomically-grounded model of salt klinotaxis, a form of chemotaxis in which changes in orientation are directed towards the source through gradual continual adjustments. We identify a minimal klinotaxis circuit by systematically searching the C. elegans connectome for pathways linking chemosensory neurons to neck motor neurons, and prune the resulting network based on both experimental considerations and several simplifying assumptions. We then use an evolutionary algorithm to find possible values for the unknown electrophsyiological parameters in the network such that the behavioral performance of the entire model is optimized to match that of the animal. Multiple runs of the evolutionary algorithm produce an ensemble of such models. We analyze in some detail the mechanisms by which one of the best evolved circuits operates and characterize the similarities and differences between this mechanism and other solutions in the ensemble. Finally, we propose a series of experiments to determine which of these alternatives the worm may be using.

摘要

在组装和分析连接组数据方面的努力不断增加,为理解神经回路连接性的原理提供了新的见解。然而,尽管连接组学取得了这些相当大的进展,但神经解剖学数据必须与神经生理学和行为数据相结合,才能全面了解神经功能。由于线虫秀丽隐杆线虫几乎具有完整的连线图和丰富的行为谱,因此它是一种理想的生物体,可以详细研究神经连接性和行为之间的这种联系。在本文中,我们开发了一个基于神经解剖学的盐趋触行为模型,这是一种趋化性形式,其方向变化通过逐渐持续的调整指向源。我们通过系统地在秀丽隐杆线虫连接组中搜索将化学感觉神经元与颈部运动神经元连接起来的途径,确定了一个最小的趋触电路,并根据实验考虑和几个简化假设对该网络进行修剪。然后,我们使用进化算法来寻找网络中未知电生理学参数的可能值,以使整个模型的行为性能优化以匹配动物的行为。进化算法的多次运行产生了此类模型的集合。我们详细分析了其中一个最佳进化电路的工作机制,并描述了该机制与集合中的其他解决方案之间的相似性和差异。最后,我们提出了一系列实验来确定线虫可能正在使用的这些替代方案中的哪一种。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2d70/3567170/182ea139725e/pcbi.1002890.g001.jpg

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