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生物学计算应用基础教程。

A first course in computing with applications to biology.

机构信息

Department of Computer Science, Harvey Mudd College, Claremont, CA 91711, USA. Tel.: +909-621-8976; Fax: +909-621-8465;

出版信息

Brief Bioinform. 2013 Sep;14(5):610-7. doi: 10.1093/bib/bbt005. Epub 2013 Feb 28.

DOI:10.1093/bib/bbt005
PMID:23449003
Abstract

We believe that undergraduate biology students must acquire a foundational background in computing including how to formulate a computational problem; develop an algorithmic solution; implement their solution in software and then test, document and use their code to explore biological phenomena. Moreover, by learning these skills in the first year, students acquire a powerful tool set that they can use and build on throughout their studies. To address this need, we have developed a first-year undergraduate course that teaches students the foundations of computational thinking and programming in the context of problems in biology. This article describes the structure and content of the course and summarizes assessment data on both affective and learning outcomes.

摘要

我们认为,大学生物学专业的学生必须掌握计算方面的基础知识,包括如何构建计算问题;开发算法解决方案;在软件中实现解决方案,然后测试、记录并使用他们的代码来探索生物现象。此外,通过在第一年学习这些技能,学生可以获得一套强大的工具,他们可以在整个学习过程中使用和构建。为了满足这一需求,我们开发了一门本科一年级课程,在生物学问题的背景下教授学生计算思维和编程的基础知识。本文介绍了课程的结构和内容,并总结了情感和学习成果评估数据。

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A first course in computing with applications to biology.生物学计算应用基础教程。
Brief Bioinform. 2013 Sep;14(5):610-7. doi: 10.1093/bib/bbt005. Epub 2013 Feb 28.
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Computational thinking in life science education.生命科学教育中的计算思维
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A programming course in bioinformatics for computer and information science students.一门面向计算机与信息科学专业学生的生物信息学编程课程。
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The Mastery Rubric for Bioinformatics: A tool to support design and evaluation of career-spanning education and training.生物信息学掌握量表:一种支持职业跨度教育和培训设计与评估的工具。
PLoS One. 2019 Nov 26;14(11):e0225256. doi: 10.1371/journal.pone.0225256. eCollection 2019.
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A global perspective on evolving bioinformatics and data science training needs.
从全球视角看不断发展的生物信息学和数据科学培训需求。
Brief Bioinform. 2019 Mar 22;20(2):398-404. doi: 10.1093/bib/bbx100.
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Teaching bioinformatics in concert.协同教授生物信息学。
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The GOBLET training portal: a global repository of bioinformatics training materials, courses and trainers.GOBLET培训门户网站:生物信息学培训材料、课程和培训师的全球资源库。
Bioinformatics. 2015 Jan 1;31(1):140-2. doi: 10.1093/bioinformatics/btu601. Epub 2014 Sep 4.