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辅助放线菌新种,一种从湖底沉积物中分离得到的放线菌。

Streptomyces aidingensis sp. nov., an actinomycete isolated from lake sediment.

机构信息

College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China.

College of Life Science, Tarim University, Alar 843300, China.

出版信息

Int J Syst Evol Microbiol. 2013 Sep;63(Pt 9):3204-3208. doi: 10.1099/ijs.0.049205-0. Epub 2013 Mar 1.

Abstract

A novel actinomycete strain, designated TRM 46012(T), was isolated from sediment of Aiding Lake in Tulufan Basin (42° 64' N 89° 26' E), north-west China. The strain was aerobic and Gram-staining-positive with an optimum NaCl concentration for growth of 0-5% (w/v). The isolate had sparse aerial mycelium and produced bud-shaped spores at the end of the aerial mycelium on ISP medium 4. The isolate contained ll-diaminopimelic acid as the diagnostic diamino acid and ribose as the major whole-cell sugar. The polar lipids were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, phosphatidylcholine, phosphatidylinositol, phosphatidylinositol mannoside, one unidentified phospholipid and three unidentified glycolipids. The predominant menaquinones were MK-9(H₆), MK-9(H₈) and MK-9(H₄). The major fatty acids were iso-C(16:0), anteiso-C(17:0) and anteiso-C(15:0). The G+C content of the DNA was 74.4 mol%. Phylogenetic analysis showed that strain TRM 46012(T) had 16S rRNA gene sequence similarity of 95.7% with the most closely related species with a validly published name, Streptomyces cheonanensis, and it could be distinguished from all species in the genus Streptomyces by using the data from this polyphasic taxonomic study. On the basis of these data, strain TRM 46012(T) should be designated as a representative of a novel species of the genus Streptomyces, for which the name Streptomyces aidingensis sp. nov. is proposed. The type strain is TRM 46012(T) ( =CGMCC 4.5739(T) =NBRC 108211(T)).

摘要

一株新的放线菌菌株,命名为 TRM 46012(T),从中国西北部吐鲁番盆地艾丁湖的沉积物中分离得到(42°64' N 89°26' E)。该菌株为需氧革兰氏阳性菌,生长最佳的 NaCl 浓度为 0-5%(w/v)。该分离株在 ISP 培养基 4 上稀疏地产生气生菌丝,并在气生菌丝末端产生芽生孢子。该分离株含有 ll-二氨基庚二酸作为诊断二氨基庚二酸和核糖作为主要的全细胞糖。极性脂质为双磷脂酰甘油、磷脂酰甘油、磷脂酰乙醇胺、磷脂酰胆碱、磷脂酰肌醇、磷脂酰肌醇甘露糖苷、一种未鉴定的磷脂和三种未鉴定的糖脂。主要的menaquinones 为 MK-9(H₆)、MK-9(H₈)和 MK-9(H₄)。主要脂肪酸为 iso-C(16:0)、anteiso-C(17:0)和 anteiso-C(15:0)。DNA 的 G+C 含量为 74.4 mol%。系统发育分析表明,菌株 TRM 46012(T)与具有有效发表名称的最密切相关的种 Streptomyces cheonanensis 的 16S rRNA 基因序列相似度为 95.7%,并可通过使用来自该多相分类学研究的数据与链霉菌属中的所有种区分开来。基于这些数据,菌株 TRM 46012(T)应被指定为链霉菌属的一个新种的代表,该新种命名为 Streptomyces aidingensis sp. nov.。模式菌株为 TRM 46012(T)( =CGMCC 4.5739(T) =NBRC 108211(T))。

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