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miRNA-1614-3p 基因种子区多态性与鸡生产性状的关联分析。

MicroRNAs-1614-3p gene seed region polymorphisms and association analysis with chicken production traits.

机构信息

College of Animal Science and Veterinary Medicine, Henan Agricultural University, Henan Innovative Engineering Research Center of Poultry Germplasm Resource, Zhengzhou, 450002, People's Republic of China.

出版信息

J Appl Genet. 2013 May;54(2):209-13. doi: 10.1007/s13353-013-0142-4. Epub 2013 Mar 2.

DOI:10.1007/s13353-013-0142-4
PMID:23456846
Abstract

In the present study, a total of 860 chickens from a Gushi-Anka F2 resource population were used to evaluate the genetic effect of the gga-miR-1614-3p gene. A novel, silent, single nucleotide polymorphism (SNP, +5 C>T) was detected in the gga-miR-1614-3p gene seed region through AvaII polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) and PCR products sequencing methods. Associations between the SNP and chicken growth, meat quality and carcass traits were performed by association analysis. The results showed that the SNP was significantly associated with breast muscle shear force and leg muscle water loss rate, wing weight, liver weight and heart weight (p<0.05), and highly significantly associated with the weight of the abdominal fat (p<0.01). The secondary structure of gga-miR-1614 and the free energy were altered due to the variation predicted by the M-fold program.

摘要

本研究以固始鸡 F2 资源群体为试验材料,利用 860 只鸡对gga-miR-1614-3p 基因的遗传效应进行了评估。通过 AvaII 聚合酶链反应-限制性片段长度多态性(PCR-RFLP)和 PCR 产物测序方法,在gga-miR-1614-3p 基因的种子区检测到一个新的、沉默的单核苷酸多态性(SNP,+5C>T)。通过关联分析,研究了 SNP 与鸡生长、肉质和胴体性状的关系。结果表明,该 SNP 与胸肌剪切力和腿肌失水率、翅膀重量、肝脏重量和心脏重量显著相关(p<0.05),与腹脂重量高度显著相关(p<0.01)。M-fold 程序预测的变异导致 gga-miR-1614 的二级结构和自由能发生改变。

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本文引用的文献

1
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Br Poult Sci. 2012;53(6):770-6. doi: 10.1080/00071668.2012.750716.
2
Polymorphisms of the interleukin-15 gene and their associations with fatness and muscle fiber traits in chickens.白细胞介素-15 基因多态性及其与鸡肥胖和肌纤维特性的关系。
J Appl Genet. 2012 Nov;53(4):443-8. doi: 10.1007/s13353-012-0111-3. Epub 2012 Aug 19.
3
The role of microRNA-binding site polymorphisms in DNA repair genes as risk factors for bladder cancer and breast cancer and their impact on radiotherapy outcomes.
在鸡基因组中进行计算机筛选,以寻找基因组区域之间的重叠:微小RNA基因、编码和非编码转录单元、数量性状位点以及遗传变异。
Chromosome Res. 2016 May;24(2):225-30. doi: 10.1007/s10577-016-9517-9. Epub 2016 Jan 22.
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Expression profiling of preadipocyte microRNAs by deep sequencing on chicken lines divergently selected for abdominal fatness.通过对腹部脂肪含量进行差异选择的鸡品系进行深度测序,分析前脂肪细胞微小RNA的表达谱。
PLoS One. 2015 Feb 12;10(2):e0117843. doi: 10.1371/journal.pone.0117843. eCollection 2015.
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Association study of a common genetic variant in pre-miR-1596 with chicken performance traits.前体miR-1596中一个常见基因变异与鸡生产性能性状的关联研究。
Mol Biol Rep. 2014 Nov;41(11):7175-81. doi: 10.1007/s11033-014-3600-0. Epub 2014 Jul 20.
miRNA 结合位点多态性在 DNA 修复基因中作为膀胱癌和乳腺癌的风险因素及其对放疗结果的影响。
Carcinogenesis. 2012 Mar;33(3):581-6. doi: 10.1093/carcin/bgr300. Epub 2011 Dec 12.
4
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5
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Mol Biol Rep. 2012 Mar;39(3):3153-60. doi: 10.1007/s11033-011-1081-y. Epub 2011 Jul 15.
6
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Mol Biol Rep. 2011 Aug;38(6):3725-9. doi: 10.1007/s11033-010-0487-2. Epub 2010 Nov 20.
9
A novel single-nucleotide polymorphism of the visfatin gene and its associations with performance traits in the chicken.鸡内脏脂肪素基因的一个新的单核苷酸多态性及其与生产性能的相关性。
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