Collaborative Drug Discovery, 1633 Bayshore Highway, Suite 342, Burlingame, CA 94010, USA.
J Cheminform. 2013 Mar 6;5(1):13. doi: 10.1186/1758-2946-5-13.
An increasing number of researchers are focused on strategies for developing inhibitors of Mycobacterium tuberculosis (Mtb) as tuberculosis (TB) drugs.
In order to learn from prior work we have collated information on molecules screened versus Mtb and their targets which has been made available in the Collaborative Drug Discovery (CDD) database. This dataset contains published data on target, essentiality, links to PubMed, TBDB, TBCyc (which provides a pathway-based visualization of the entire cellular biochemical network) and human homolog information. The development of mobile cheminformatics apps could lower the barrier to drug discovery and promote collaboration. Therefore we have used this set of over 700 molecules screened versus Mtb and their targets to create a free mobile app (TB Mobile) that displays molecule structures and links to the bioinformatics data. By input of a molecular structures and performing a similarity search within the app we can infer potential targets or search by targets to retrieve compounds known to be active.
TB Mobile may assist researchers as part of their workflow in identifying potential targets for hits generated from phenotypic screening and in prioritizing them for further follow-up. The app is designed to lower the barriers to accessing this information, so that all researchers with an interest in combatting this deadly disease can use it freely to the benefit of their own efforts.
越来越多的研究人员专注于开发结核分枝杆菌 (Mtb) 抑制剂的策略,将其作为结核病 (TB) 药物。
为了借鉴以往的工作,我们整理了针对 Mtb 进行筛选的分子及其靶点的信息,这些信息已在协作药物发现 (CDD) 数据库中提供。该数据集包含有关目标、必需性、与 PubMed、TBDB、TBCyc(提供整个细胞生化网络的基于途径的可视化)和人类同源物信息的链接的已发表数据。移动化学信息学应用程序的开发可以降低药物发现的门槛并促进合作。因此,我们使用了这组针对 Mtb 进行筛选的超过 700 种分子及其靶点来创建一个免费的移动应用程序 (TB Mobile),该应用程序可以显示分子结构和与生物信息学数据的链接。通过输入分子结构并在应用程序内执行相似性搜索,我们可以推断出潜在的靶点,或者按靶点搜索检索已知活性的化合物。
TB Mobile 可以帮助研究人员在识别表型筛选产生的命中的潜在靶点并对其进行优先级排序以进行进一步跟进方面作为其工作流程的一部分。该应用程序旨在降低获取这些信息的障碍,以便所有对防治这种致命疾病感兴趣的研究人员都可以免费使用它,从而为他们自己的努力带来好处。