Royal Belgian Institute of Natural Sciences, Brussels, Belgium ; Laboratoire d'Evolution Biologique et Ecologie, Université Libre de Bruxelles, Brussels, Belgium.
PLoS One. 2013;8(4):e60736. doi: 10.1371/journal.pone.0060736. Epub 2013 Apr 5.
Delimiting species in facultatively selfing taxa is a challenging problem of which the terrestrial pulmonate snail genus Rumina is a good example. These snails have a mixed breeding system and show a high degree of shell and color variation. Three nominal species (R. decollata, R. saharica and R. paivae) and two color morphs within R. decollata (dark and light) are currently recognized. The present study aims at evaluating to what extent these entities reflect evolutionary diverging taxonomic units, rather than fixed polymorphisms due to sustained selfing. Therefore, a phylogenetic analysis of nuclear (ITS1, ITS2) and mitochondrial DNA (COI, CytB, 12S rDNA, 16S rDNA) sequences was performed. Putative species in Rumina, inferred from the mitochondrial DNA phylogeny, were compared with those proposed on the basis of the COI gene by (1) DNA barcoding gap analysis, (2) Automatic Barcode Gap Discovery, (3) the species delimitation plug-in of the Geneious software, (4) the Genealogical Sorting Index, and (5) the General Mixed Yule Coalescent model. It is shown that these methods produce a variety of different species hypotheses and as such one may wonder to what extent species delimitation methods are really useful. With respect to Rumina, the data suggest at least seven species, one corresponding to R. saharica and six that are currently grouped under the name R. decollata. The species-level status of R. paivae is rejected.
在兼性自交类群中划分物种是一个具有挑战性的问题,陆生肺螺类蜗牛属 Rumina 就是一个很好的例子。这些蜗牛具有混合繁殖系统,表现出高度的壳和颜色变异。目前公认有三个指名种(Rumina decollata、Rumina saharica 和 Rumina paivae)和 R. decollata 中的两个颜色形态(深色和浅色)。本研究旨在评估这些实体在多大程度上反映了进化上不同的分类单元,而不是由于持续自交而导致的固定多态性。因此,对核(ITS1、ITS2)和线粒体 DNA(COI、CytB、12S rDNA、16S rDNA)序列进行了系统发育分析。从线粒体 DNA 系统发育推断出的 Rumina 假定种与基于 COI 基因提出的假定种进行了比较(1)DNA 条形码间隙分析,(2)自动条形码间隙发现,(3)Geneious 软件的物种划分插件,(4)系统发育分类指数,以及(5)广义混合 Yule 合并模型。结果表明,这些方法产生了各种不同的物种假设,因此人们可能会想知道物种划分方法在多大程度上真正有用。就 Rumina 而言,数据表明至少有七个物种,一个对应于 R. saharica,六个目前归为 R. decollata。R. paivae 的种级地位被拒绝。