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盐生土壤诺卡氏菌(Nocardioides salsibiostraticola),从沿海海水形成的生物膜中分离得到。

Nocardioides salsibiostraticola sp. nov., isolated from biofilm formed in coastal seawater.

机构信息

Microbial Oceanography Laboratory, School of Earth and Environmental Sciences and Research Institute of Oceanography, Seoul National University, 599 Gwanak-ro, Gwanak-gu, Seoul 151-742, Republic of Korea.

Division of Polar Life Sciences, Korea Polar Research Institute, Songdo Techno Park, Songdo-dong 7-50, Yeonsu-gu, Incheon 406-840, Republic of Korea.

出版信息

Int J Syst Evol Microbiol. 2013 Oct;63(Pt 10):3800-3806. doi: 10.1099/ijs.0.051037-0. Epub 2013 May 10.

Abstract

A Gram-staining-positive, non-motile, aerobic, non-spore-forming and short rod-shaped bacterial strain, PAMC 26527(T), was isolated from biofilm formed in coastal seawater of the Norwegian Sea. Analysis of the 16S rRNA gene sequence of strain PAMC 26527(T) revealed a clear affiliation with the genus Nocardioides. Based on phylogenetic analysis, strain PAMC 26527(T) showed the closest phylogenetic relationship with Nocardioides caricicola YC6903(T) with 16S rRNA gene sequence similarity of 96.3 %. Strain PAMC 26527(T) grew in the presence of 0-5.0 % sea salts. The optimum temperature and pH for growth were 20 °C and pH 7.5. The major cellular fatty acids of strain PAMC 26527(T) were iso-C16 : 0, C17 : 1ω8c and C18 : 1ω9c and the major isoprenoid quinone was MK-8(H4). Cell-wall analysis showed that strain PAMC 26527(T) contained LL-diaminopimelic acid. The genomic DNA G+C content was 69.3 mol%. The combined phenotypic, chemotaxonomic and phylogenetic data showed that strain PAMC 26527(T) could be clearly distinguished from recognized members of the genus Nocardioides. Thus, strain PAMC 26527(T) should be classified as representing a novel species in the genus Nocardioides, for which the name Nocardioides salsibiostraticola sp. nov. is proposed. The type strain is PAMC 26527(T) ( = KCTC 29158(T) = JCM 18743(T)).

摘要

一株革兰氏阳性、非运动、需氧、不产芽孢的短杆状细菌,PAMC 26527(T),从挪威海沿海海水生物膜中分离得到。对菌株 PAMC 26527(T)的 16S rRNA 基因序列分析表明,它与诺卡氏菌属有明确的亲缘关系。基于系统发育分析,菌株 PAMC 26527(T)与 Nocardioides caricicola YC6903(T)的亲缘关系最近,16S rRNA 基因序列相似度为 96.3%。菌株 PAMC 26527(T)在 0-5.0%的海盐存在下生长。最适生长温度和 pH 值分别为 20°C 和 pH 7.5。菌株 PAMC 26527(T)的主要细胞脂肪酸为 iso-C16:0、C17:1ω8c 和 C18:1ω9c,主要异戊烯醌为 MK-8(H4)。细胞壁分析表明,菌株 PAMC 26527(T)含有 LL-二氨基庚二酸。基因组 DNA G+C 含量为 69.3 mol%。综合表型、化学分类和系统发育数据表明,菌株 PAMC 26527(T)可与公认的诺卡氏菌属成员明显区分开来。因此,菌株 PAMC 26527(T)应归类为诺卡氏菌属的一个新种,命名为 Nocardioides salsibiostraticola sp. nov.。模式菌株为 PAMC 26527(T)(=KCTC 29158(T)=JCM 18743(T))。

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