School of Life Sciences, University of Nevada, Las Vegas, Las Vegas, Nevada 89154-4004, USA.
Nat Commun. 2013;4:1854. doi: 10.1038/ncomms2884.
OP9 is a yet-uncultivated bacterial lineage found in geothermal systems, petroleum reservoirs, anaerobic digesters and wastewater treatment facilities. Here we use single-cell and metagenome sequencing to obtain two distinct, nearly complete OP9 genomes, one constructed from single cells sorted from hot spring sediments and the other derived from binned metagenomic contigs from an in situ-enriched cellulolytic, thermophilic community. Phylogenomic analyses support the designation of OP9 as a candidate phylum for which we propose the name 'Atribacteria'. Although a plurality of predicted proteins is most similar to those from Firmicutes, the presence of key genes suggests a diderm cell envelope. Metabolic reconstruction from the core genome suggests an anaerobic lifestyle based on sugar fermentation by Embden-Meyerhof glycolysis with production of hydrogen, acetate and ethanol. Putative glycohydrolases and an endoglucanase may enable catabolism of (hemi)cellulose in thermal environments. This study lays a foundation for understanding the physiology and ecological role of the 'Atribacteria'.
OP9 是一种尚未培养的细菌谱系,存在于地热系统、石油储层、厌氧消化器和废水处理设施中。在这里,我们使用单细胞和宏基因组测序获得了两个截然不同的、几乎完整的 OP9 基因组,一个是从温泉沉积物中分离的单个细胞构建的,另一个是从原位富集的纤维素分解、嗜热群落的分类基因组 contigs 中衍生的。系统发育基因组分析支持将 OP9 指定为候选门,我们建议将其命名为“Atribacteria”。尽管大多数预测蛋白与厚壁菌门最相似,但关键基因的存在表明存在双菌细胞壁。从核心基因组进行的代谢重建表明,一种基于糖发酵的厌氧生活方式,通过 Embden-Meyerhof 糖酵解产生氢气、乙酸和乙醇。推测的糖水解酶和内切葡聚糖酶可能使(半)纤维素在热环境中发生代谢。这项研究为理解“Atribacteria”的生理学和生态作用奠定了基础。