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陆地细菌:重新定义细菌包膜的多样性、生物发生与进化

Terrabacteria: redefining bacterial envelope diversity, biogenesis and evolution.

作者信息

Beaud Benyahia Basile, Taib Najwa, Beloin Christophe, Gribaldo Simonetta

机构信息

Evolutionary Biology of the Microbial Cell Laboratory, Institut Pasteur, Université Paris Cité, Paris, France.

Bioinformatics and Biostatistics Hub, Institut Pasteur, Université Paris Cité, Paris, France.

出版信息

Nat Rev Microbiol. 2025 Jan;23(1):41-56. doi: 10.1038/s41579-024-01088-0. Epub 2024 Aug 28.

Abstract

The bacterial envelope is one of the oldest and most essential cellular components and has been traditionally divided into Gram-positive (monoderm) and Gram-negative (diderm). Recent landmark studies have challenged a major paradigm in microbiology by inferring that the last bacterial common ancestor had a diderm envelope and that the outer membrane (OM) was lost repeatedly in evolution to give rise to monoderms. Intriguingly, OM losses appear to have occurred exclusively in the Terrabacteria, one of the two major clades of bacteria. In this Review, we present current knowledge about the Terrabacteria. We describe their diversity and phylogeny and then highlight the vast phenotypic diversity of the Terrabacteria cell envelopes, which display large deviations from the textbook examples of diderms and monoderms, challenging the classical Gram-positive-Gram-negative divide. We highlight the striking differences in the systems involved in OM biogenesis in Terrabacteria with respect to the classical diderm experimental models and how they provide novel insights into the diversity and biogenesis of the bacterial cell envelope. We also discuss the potential evolutionary steps that might have led to the multiple losses of the OM and speculate on how the very first OM might have emerged before the last bacterial common ancestor.

摘要

细菌包膜是最古老且最重要的细胞组成部分之一,传统上分为革兰氏阳性菌(单膜菌)和革兰氏阴性菌(双膜菌)。最近具有里程碑意义的研究对微生物学的一个主要范式提出了挑战,该研究推断最后一个细菌共同祖先具有双膜包膜,并且外膜(OM)在进化过程中多次丢失从而产生了单膜菌。有趣的是,外膜丢失似乎仅发生在细菌的两个主要分支之一——陆地细菌中。在这篇综述中,我们介绍了关于陆地细菌的现有知识。我们描述了它们的多样性和系统发育,然后强调了陆地细菌细胞膜的巨大表型多样性,这些细胞膜与教科书上双膜菌和单膜菌的例子有很大偏差,挑战了经典的革兰氏阳性菌 - 革兰氏阴性菌划分。我们强调了陆地细菌中外膜生物合成相关系统与经典双膜实验模型相比的显著差异,以及它们如何为细菌细胞膜的多样性和生物合成提供新的见解。我们还讨论了可能导致外膜多次丢失的潜在进化步骤,并推测了第一个外膜可能在最后一个细菌共同祖先之前是如何出现的。

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