• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

极端数据库:极端嗜热古菌和细菌的统一网络资源库。

ExtremeDB: a unified web repository of extremophilic archaea and bacteria.

机构信息

Environmental Biotechnology Division, Institute of Genomics and Integrative Biology, (IGIB-CSIR), Delhi, India.

出版信息

PLoS One. 2013 May 16;8(5):e63083. doi: 10.1371/journal.pone.0063083. Print 2013.

DOI:10.1371/journal.pone.0063083
PMID:23696792
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3656046/
Abstract

Extremophiles are the microorganisms which can survive under extreme conditions of temperature, pressure, pH, salinity etc. They have gained much attention for their potential role in biotechnological and industrial applications. The large amount of experimental data in the literature is so diverse, that it becomes difficult and time consuming for the researcher to implement it in various areas of research. Therefore, a systematic arrangement of data and redirection in a similar fashion through web interface can assist researchers in analyzing the data as per their requirement. ExtremeDB is a freely available web based relational database which integrates general characteristics, genome-proteome information, industrial applications and recent scientific investigations of the seven major groups of 865 extremophillic microorganisms. The search options are user friendly and analyses tools such as Compare and Extreme BLAST have been incorporated for comparative analysis of two or more extremophiles and determining the sequence similarity of a given protein/nucleotide in relation to other extremophiles respectively. The effort put forth herein in the form of database, would open up new avenues on the potential utility of extremophiles in applied research. ExtremeDB is freely accessible via http://extrem.igib.res.in.

摘要

极端微生物是指能够在温度、压力、pH 值、盐度等极端条件下生存的微生物。它们在生物技术和工业应用中的潜在作用引起了广泛关注。文献中有大量的实验数据,其多样性使得研究人员难以在各个研究领域中实施这些数据。因此,通过网络界面对数据进行系统整理和重新定向,可以帮助研究人员根据需要分析数据。ExtremeDB 是一个免费的基于网络的关系数据库,它整合了 865 种嗜极微生物的七大主要类群的一般特征、基因组-蛋白质组信息、工业应用和最新科学研究。搜索选项用户友好,并且还整合了 Compare 和 Extreme BLAST 等分析工具,可用于比较两个或更多极端微生物,并确定给定蛋白质/核苷酸与其他极端微生物的序列相似性。本文以数据库的形式进行的研究工作,将为极端微生物在应用研究中的潜在应用开辟新途径。可以通过 http://extrem.igib.res.in 免费访问 ExtremeDB。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c8e/3656046/c3b7c3898662/pone.0063083.g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c8e/3656046/6e0f0dccecf2/pone.0063083.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c8e/3656046/d3bf89c5e6ff/pone.0063083.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c8e/3656046/1e8669faa904/pone.0063083.g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c8e/3656046/c3b7c3898662/pone.0063083.g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c8e/3656046/6e0f0dccecf2/pone.0063083.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c8e/3656046/d3bf89c5e6ff/pone.0063083.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c8e/3656046/1e8669faa904/pone.0063083.g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c8e/3656046/c3b7c3898662/pone.0063083.g005.jpg

相似文献

1
ExtremeDB: a unified web repository of extremophilic archaea and bacteria.极端数据库:极端嗜热古菌和细菌的统一网络资源库。
PLoS One. 2013 May 16;8(5):e63083. doi: 10.1371/journal.pone.0063083. Print 2013.
2
The bright side of microbial dark matter: lessons learned from the uncultivated majority.微生物暗物质的光明面:从未培养的大多数中学到的经验教训。
Curr Opin Microbiol. 2016 Jun;31:217-226. doi: 10.1016/j.mib.2016.04.020. Epub 2016 May 16.
3
Extremophiles and their expanding biotechnological applications.极端微生物及其不断拓展的生物技术应用。
Arch Microbiol. 2024 May 7;206(6):247. doi: 10.1007/s00203-024-03981-x.
4
CRISPI: a CRISPR interactive database.CRISPI:一个 CRISPR 交互数据库。
Bioinformatics. 2009 Dec 15;25(24):3317-8. doi: 10.1093/bioinformatics/btp586. Epub 2009 Oct 21.
5
Molecular biology of extremophiles: recent progress on the hyperthermophilic archaeon Sulfolobus.嗜极生物的分子生物学:嗜热古菌硫化叶菌的最新研究进展
Antonie Van Leeuwenhoek. 2002 Aug;81(1-4):85-97. doi: 10.1023/a:1020577510469.
6
PSAT: a web tool to compare genomic neighborhoods of multiple prokaryotic genomes.PSAT:一个用于比较多个原核生物基因组的基因组邻域的网络工具。
BMC Bioinformatics. 2008 Mar 26;9:170. doi: 10.1186/1471-2105-9-170.
7
Investigation into archaeal extremophilic lifestyles through comparative proteogenomic analysis.通过比较蛋白基因组学分析探究古菌极端生境生活方式。
J Biomol Struct Dyn. 2021 Nov;39(18):7080-7092. doi: 10.1080/07391102.2020.1808531. Epub 2020 Aug 21.
8
Protein adaptations in archaeal extremophiles.古菌极端生物中的蛋白质适应。
Archaea. 2013;2013:373275. doi: 10.1155/2013/373275. Epub 2013 Sep 16.
9
The Methods of Digging for "Gold" within the Salt: Characterization of Halophilic Prokaryotes and Identification of Their Valuable Biological Products Using Sequencing and Genome Mining Tools.从盐中挖掘“黄金”的方法:利用测序和基因组挖掘工具对嗜盐原核生物进行特征分析及鉴定其有价值的生物产物。
Genes (Basel). 2021 Nov 1;12(11):1756. doi: 10.3390/genes12111756.
10
The Undeniable Potential of Thermophiles in Industrial Processes.嗜热菌在工业过程中的不可忽视的潜力。
Int J Mol Sci. 2024 Jul 13;25(14):7685. doi: 10.3390/ijms25147685.

引用本文的文献

1
ThermoBase: A database of the phylogeny and physiology of thermophilic and hyperthermophilic organisms.热基数据库:嗜热和超嗜热生物体的系统发育和生理学数据库。
PLoS One. 2022 May 10;17(5):e0268253. doi: 10.1371/journal.pone.0268253. eCollection 2022.
2
Deep Hypersaline Anoxic Basins as Untapped Reservoir of Polyextremophilic Prokaryotes of Biotechnological Interest.深盐缺氧盆地是具有生物技术应用潜力的广盐极端微生物的未开发资源库。
Mar Drugs. 2020 Jan 30;18(2):91. doi: 10.3390/md18020091.
3
Correction: ExtremeDB: A Unified Web Repository of Extremophilic Archaea and Bacteria.

本文引用的文献

1
Database resources of the National Center for Biotechnology Information.美国国立生物技术信息中心的数据库资源。
Nucleic Acids Res. 2008 Jan;36(Database issue):D13-21. doi: 10.1093/nar/gkm1000. Epub 2007 Nov 27.
2
Recent progress towards the application of hyperthermophiles and their enzymes.嗜热菌及其酶应用方面的最新进展。
Curr Opin Chem Biol. 2005 Apr;9(2):166-73. doi: 10.1016/j.cbpa.2005.02.013.
3
Introduction. Extremophilic archaea and bacteria.引言。嗜极古菌和细菌。
更正:极端数据库:嗜极古菌和细菌的统一网络知识库。
PLoS One. 2017 Jun 1;12(6):e0179119. doi: 10.1371/journal.pone.0179119. eCollection 2017.
4
NEMiD: a web-based curated microbial diversity database with geo-based plotting.NEMiD:一个基于网络的经过整理的微生物多样性数据库,并带有基于地理位置的绘图功能。
PLoS One. 2014 Apr 8;9(4):e94088. doi: 10.1371/journal.pone.0094088. eCollection 2014.
J Bioenerg Biomembr. 2004 Feb;36(1):3-4. doi: 10.1023/b:jobb.0000019693.71612.4c.
4
Biotechnological uses of archaeal extremozymes.古菌极端酶的生物技术应用。
Biotechnol Adv. 2001 Jul;19(4):261-78. doi: 10.1016/s0734-9750(01)00061-1.
5
BRENDA, enzyme data and metabolic information.布伦达(BRENDA),酶数据与代谢信息。
Nucleic Acids Res. 2002 Jan 1;30(1):47-9. doi: 10.1093/nar/30.1.47.
6
Life in extreme environments.极端环境中的生命。
Nature. 2001 Feb 22;409(6823):1092-101. doi: 10.1038/35059215.
7
Genomes OnLine Database (GOLD): a monitor of genome projects world-wide.基因组在线数据库(GOLD):全球基因组计划的监测工具。
Nucleic Acids Res. 2001 Jan 1;29(1):126-7. doi: 10.1093/nar/29.1.126.
8
The Protein Data Bank.蛋白质数据库。
Nucleic Acids Res. 2000 Jan 1;28(1):235-42. doi: 10.1093/nar/28.1.235.
9
Extremozymes.极端酶
Curr Opin Chem Biol. 1999 Feb;3(1):39-46. doi: 10.1016/s1367-5931(99)80008-8.
10
KEGG: Kyoto Encyclopedia of Genes and Genomes.KEGG:京都基因与基因组百科全书。
Nucleic Acids Res. 1999 Jan 1;27(1):29-34. doi: 10.1093/nar/27.1.29.