Environmental Biotechnology Division, Institute of Genomics and Integrative Biology, (IGIB-CSIR), Delhi, India.
PLoS One. 2013 May 16;8(5):e63083. doi: 10.1371/journal.pone.0063083. Print 2013.
Extremophiles are the microorganisms which can survive under extreme conditions of temperature, pressure, pH, salinity etc. They have gained much attention for their potential role in biotechnological and industrial applications. The large amount of experimental data in the literature is so diverse, that it becomes difficult and time consuming for the researcher to implement it in various areas of research. Therefore, a systematic arrangement of data and redirection in a similar fashion through web interface can assist researchers in analyzing the data as per their requirement. ExtremeDB is a freely available web based relational database which integrates general characteristics, genome-proteome information, industrial applications and recent scientific investigations of the seven major groups of 865 extremophillic microorganisms. The search options are user friendly and analyses tools such as Compare and Extreme BLAST have been incorporated for comparative analysis of two or more extremophiles and determining the sequence similarity of a given protein/nucleotide in relation to other extremophiles respectively. The effort put forth herein in the form of database, would open up new avenues on the potential utility of extremophiles in applied research. ExtremeDB is freely accessible via http://extrem.igib.res.in.
极端微生物是指能够在温度、压力、pH 值、盐度等极端条件下生存的微生物。它们在生物技术和工业应用中的潜在作用引起了广泛关注。文献中有大量的实验数据,其多样性使得研究人员难以在各个研究领域中实施这些数据。因此,通过网络界面对数据进行系统整理和重新定向,可以帮助研究人员根据需要分析数据。ExtremeDB 是一个免费的基于网络的关系数据库,它整合了 865 种嗜极微生物的七大主要类群的一般特征、基因组-蛋白质组信息、工业应用和最新科学研究。搜索选项用户友好,并且还整合了 Compare 和 Extreme BLAST 等分析工具,可用于比较两个或更多极端微生物,并确定给定蛋白质/核苷酸与其他极端微生物的序列相似性。本文以数据库的形式进行的研究工作,将为极端微生物在应用研究中的潜在应用开辟新途径。可以通过 http://extrem.igib.res.in 免费访问 ExtremeDB。