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pOZ176 的完整序列,这是一个 500 千碱基对的 IncP-2 质粒,编码 IMP-9 介导的碳青霉烯类耐药,来自爆发分离株铜绿假单胞菌 96。

Complete sequence of pOZ176, a 500-kilobase IncP-2 plasmid encoding IMP-9-mediated carbapenem resistance, from outbreak isolate Pseudomonas aeruginosa 96.

机构信息

Department of Laboratory Medicine and Pathobiology, University of Toronto, Toronto, ON, Canada.

出版信息

Antimicrob Agents Chemother. 2013 Aug;57(8):3775-82. doi: 10.1128/AAC.00423-13. Epub 2013 May 28.

Abstract

Pseudomonas aeruginosa 96 (PA96) was isolated during a multicenter surveillance study in Guangzhou, China, in 2000. Whole-genome sequencing of this outbreak strain facilitated analysis of its IncP-2 carbapenem-resistant plasmid, pOZ176. The plasmid had a length of 500,839 bp and an average percent G+C content of 57%. Of the 618 predicted open reading frames, 65% encode hypothetical proteins. The pOZ176 backbone is not closely related to any plasmids thus far sequenced, but some similarity to pQBR103 of Pseudomonas fluorescens SBW25 was observed. Two multiresistant class 1 integrons and several insertion sequences were identified. The blaIMP-9-carrying integron contained aacA4 → bla(IMP-9) → aacA4, flanked upstream by Tn21 tnpMRA and downstream by a complete tni operon of Tn402 and a mer module, named Tn6016. The second integron carried aacA4 → catB8a → bla(OXA-10) and was flanked by Tn1403-like tnpRA and a sul1-type 3' conserved sequence (3'-CS), named Tn6217. Other features include three resistance genes similar to those of Tn5, a tellurite resistance operon, and two pil operons. The replication and maintenance systems exhibit similarity to a genomic island of Ralstonia solanacearum GM1000. Codon usage analysis suggests the recent acquisition of bla(IMP-9). The origins of the integrons on pOZ176 indicated separate horizontal gene transfer events driven by antibiotic selection. The novel mosaic structure of pOZ176 suggests that it is derived from environmental bacteria.

摘要

铜绿假单胞菌 96(PA96)于 2000 年在中国广州的一项多中心监测研究中分离得到。对该暴发株的全基因组测序促进了其 IncP-2 碳青霉烯类耐药质粒 pOZ176 的分析。该质粒长 500839bp,平均 GC 含量为 57%。在 618 个预测的开放阅读框中,65%编码假设蛋白。pOZ176 骨架与迄今为止测序的任何质粒都没有密切关系,但与荧光假单胞菌 SBW25 的 pQBR103 有一些相似性。鉴定出两个多耐药类 1 整合子和几个插入序列。携带 blaIMP-9 的整合子包含 aacA4→bla(IMP-9)→aacA4,上游由 Tn21 tnpMRA 侧翼,下游由完整的 Tn402 tni 操纵子和 mer 模块(命名为 Tn6016)侧翼。第二个整合子携带 aacA4→catB8a→bla(OXA-10),由 Tn1403 样 tnpRA 和 sul1 型 3'保守序列(3'-CS)(命名为 Tn6217)侧翼。其他特征包括三个类似于 Tn5 的耐药基因、一个亚碲酸盐抗性操纵子和两个 pil 操纵子。复制和维持系统与茄科雷尔氏菌 GM1000 的基因组岛具有相似性。密码子使用分析表明 bla(IMP-9)是最近获得的。pOZ176 上整合子的起源表明,这是由抗生素选择驱动的独立水平基因转移事件。pOZ176 的新型镶嵌结构表明它源自环境细菌。

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