丁酸高产菌株酪丁酸梭菌ATCC 25755的基因组序列
Genome Sequence of Clostridium tyrobutyricum ATCC 25755, a Butyric Acid-Overproducing Strain.
作者信息
Jiang Ling, Zhu Liying, Xu Xian, Li Yanping, Li Shuang, Huang He
机构信息
College of Food Science and Light Industry, Nanjing University of Technology, Nanjing, China.
出版信息
Genome Announc. 2013 May 30;1(3):e00308-13. doi: 10.1128/genomeA.00308-13.
Abstract
Clostridium tyrobutyricum ATCC 25755 is an efficient producer of butyric acid. Here we report a 3.01-Mb assembly of its genome sequence and other useful information, including the coding sequences (CDSs) responsible for an alternative pathway leading to acetate synthesis as well as a series of membrane transport systems.
摘要
酪丁酸梭菌ATCC 25755是丁酸的高效生产者。在此，我们报告了其基因组序列的3.01 Mb组装结果以及其他有用信息，包括负责导致乙酸盐合成的替代途径的编码序列（CDS）以及一系列膜转运系统。
相似文献
1
Genome Sequence of Clostridium tyrobutyricum ATCC 25755, a Butyric Acid-Overproducing Strain.丁酸高产菌株酪丁酸梭菌ATCC 25755的基因组序列
Genome Announc. 2013 May 30;1(3):e00308-13. doi: 10.1128/genomeA.00308-13.
2
Deciphering Clostridium tyrobutyricum Metabolism Based on the Whole-Genome Sequence and Proteome Analyses.基于全基因组序列和蛋白质组分析解析酪丁酸梭菌的代谢
mBio. 2016 Jun 14;7(3):e00743-16. doi: 10.1128/mBio.00743-16.
3
Enhanced butyric acid tolerance and production by Class I heat shock protein-overproducing Clostridium tyrobutyricum ATCC 25755.过量表达I类热休克蛋白的酪丁酸梭菌ATCC 25755对丁酸耐受性增强及产量提高
J Ind Microbiol Biotechnol. 2017 Aug;44(8):1145-1156. doi: 10.1007/s10295-017-1939-7. Epub 2017 Apr 24.
4
Draft Genome Sequence of the Butyric Acid Producer Clostridium tyrobutyricum Strain CIP I-776 (IFP923).丁酸产生菌酪丁酸梭菌菌株CIP I-776（IFP923）的基因组序列草图
Genome Announc. 2016 Mar 3;4(2):e00048-16. doi: 10.1128/genomeA.00048-16.
5
Butyric acid production from spent coffee grounds by engineered Clostridium tyrobutyricum overexpressing galactose catabolism genes.利用过表达半乳糖代谢基因的工程化酪丁酸梭菌从废咖啡渣中生产丁酸。
Bioresour Technol. 2020 May;304:122977. doi: 10.1016/j.biortech.2020.122977. Epub 2020 Feb 7.
6
Insights from the complete genome sequence of Clostridium tyrobutyricum provide a platform for biotechnological and industrial applications.酪丁酸梭菌全基因组序列的见解为生物技术和工业应用提供了一个平台。
J Ind Microbiol Biotechnol. 2017 Aug;44(8):1245-1260. doi: 10.1007/s10295-017-1956-6. Epub 2017 May 23.
7
Metabolic engineering of Clostridium tyrobutyricum for enhanced butyric acid production with high butyrate/acetate ratio.梭菌 Tyrobutyricum 的代谢工程改造以提高丁酸/乙酸比生产高浓度丁酸。
Appl Microbiol Biotechnol. 2018 May;102(10):4511-4522. doi: 10.1007/s00253-018-8954-0. Epub 2018 Apr 7.
8
Construction and characterization of pta gene-deleted mutant of Clostridium tyrobutyricum for enhanced butyric acid fermentation.用于增强丁酸发酵的酪丁酸梭菌pta基因缺失突变体的构建与表征
Biotechnol Bioeng. 2005 Apr 20;90(2):154-66. doi: 10.1002/bit.20354.
9
Co-culturing a novel Bacillus strain with Clostridium tyrobutyricum ATCC 25755 to produce butyric acid from sucrose.将新型芽孢杆菌菌株与 Clostridium tyrobutyricum ATCC 25755 共培养，从蔗糖中生产丁酸。
Biotechnol Biofuels. 2013 Mar 4;6(1):35. doi: 10.1186/1754-6834-6-35.
10
Direct conversion of untreated cane molasses into butyric acid by engineered Clostridium tyrobutyricum.经工程改造的酪丁酸梭菌将未经处理的甘蔗糖蜜直接转化为丁酸。
Bioresour Technol. 2020 Apr;301:122764. doi: 10.1016/j.biortech.2020.122764. Epub 2020 Jan 10.
引用本文的文献
1
Production of a Bacteriocin Like Protein PEG 446 from Clostridium tyrobutyricum NRRL B-67062.从酪丁酸梭菌 NRRL B-67062 中生产细菌素样蛋白 PEG 446。
Probiotics Antimicrob Proteins. 2024 Aug;16(4):1411-1426. doi: 10.1007/s12602-023-10211-1. Epub 2024 Jan 22.
2
Genome Sequence Analysis of Clostridium tyrobutyricum, a Promising Microbial Host for Human Health and Industrial Applications.酪丁酸梭菌的基因组序列分析，一种对人类健康和工业应用有前景的微生物宿主。
Curr Microbiol. 2020 Nov;77(11):3685-3694. doi: 10.1007/s00284-020-02175-0. Epub 2020 Sep 4.
3
Whole-Genome Sequencing and Annotation of Clostridium tyrobutyricum Strain Cirm BIA 2237, Isolated from Silage.从青贮饲料中分离的酪丁酸梭菌菌株Cirm BIA 2237的全基因组测序与注释
Microbiol Resour Announc. 2019 Jul 25;8(30):e00492-19. doi: 10.1128/MRA.00492-19.
4
Fermentative hydrogen production from Jerusalem artichoke by Clostridium tyrobutyricum expressing exo-inulinase gene.经表达外切菊粉酶基因的酪丁酸梭菌发酵菊芋生产氢气。
Sci Rep. 2017 Aug 11;7(1):7940. doi: 10.1038/s41598-017-07207-7.
5
Deciphering Clostridium tyrobutyricum Metabolism Based on the Whole-Genome Sequence and Proteome Analyses.基于全基因组序列和蛋白质组分析解析酪丁酸梭菌的代谢
mBio. 2016 Jun 14;7(3):e00743-16. doi: 10.1128/mBio.00743-16.
6
Visceral hypersensitive rats share common dysbiosis features with irritable bowel syndrome patients.内脏高敏大鼠与肠易激综合征患者具有共同的肠道菌群失调特征。
World J Gastroenterol. 2016 Jun 14;22(22):5211-27. doi: 10.3748/wjg.v22.i22.5211.
7
Draft Genome Sequence of the Butyric Acid Producer Clostridium tyrobutyricum Strain CIP I-776 (IFP923).丁酸产生菌酪丁酸梭菌菌株CIP I-776（IFP923）的基因组序列草图
Genome Announc. 2016 Mar 3;4(2):e00048-16. doi: 10.1128/genomeA.00048-16.
8
Draft Genome Sequences of Clostridium tyrobutyricum Strains FAM22552 and FAM22553, Isolated from Swiss Semihard Red-Smear Cheese.从瑞士半硬质红纹奶酪中分离出的酪丁酸梭菌菌株FAM22552和FAM22553的基因组序列草图
Genome Announc. 2015 Mar 12;3(2):e00078-15. doi: 10.1128/genomeA.00078-15.
本文引用的文献
1
Adaptive evolution for fast growth on glucose and the effects on the regulation of glucose transport system in Clostridium tyrobutyricum.在葡萄糖上的快速生长的适应性进化及其对丁酸梭菌葡萄糖转运系统调控的影响。
Biotechnol Bioeng. 2012 Mar;109(3):708-18. doi: 10.1002/bit.23346. Epub 2011 Dec 20.
2
Control and optimization of Clostridium tyrobutyricum ATCC 25755 adhesion into fibrous matrix in a fibrous bed bioreactor.在纤维床生物反应器中控制和优化凝结芽孢杆菌 ATCC 25755 黏附到纤维基质中。
Appl Biochem Biotechnol. 2011 Sep;165(1):98-108. doi: 10.1007/s12010-011-9236-9. Epub 2011 Apr 12.
3
Enhanced butyric acid tolerance and bioproduction by Clostridium tyrobutyricum immobilized in a fibrous bed bioreactor.固定化在纤维床生物反应器中的酪丁酸梭菌提高了丁酸耐受性和生物产量。
Biotechnol Bioeng. 2011 Jan;108(1):31-40. doi: 10.1002/bit.22927.
4
Phosphoenolpyruvate-dependent phosphorylation of sucrose by Clostridium tyrobutyricum ZJU 8235: evidence for the phosphotransferase transport system.酪丁酸梭菌ZJU 8235对蔗糖的磷酸烯醇丙酮酸依赖性磷酸化作用：磷酸转移酶转运系统的证据
Bioresour Technol. 2010 Jan;101(1):304-9. doi: 10.1016/j.biortech.2009.08.024. Epub 2009 Sep 1.
5
Butyric acid fermentation in a fibrous bed bioreactor with immobilized Clostridium tyrobutyricum from cane molasses.利用固定化酪丁酸梭状芽孢杆菌在纤维床生物反应器中从甘蔗糖蜜进行丁酸发酵。
Bioresour Technol. 2009 Jul;100(13):3403-9. doi: 10.1016/j.biortech.2009.02.032. Epub 2009 Mar 17.
6
Production of butyric acid from glucose and xylose with immobilized cells of Clostridium tyrobutyricum in a fibrous-bed bioreactor.在纤维床生物反应器中，利用固定化 Clostridium tyrobutyricum 细胞从葡萄糖和木糖生产丁酸。
Appl Biochem Biotechnol. 2010 Jan;160(2):350-9. doi: 10.1007/s12010-008-8305-1. Epub 2008 Jul 24.
7
Velvet: algorithms for de novo short read assembly using de Bruijn graphs.《天鹅绒：使用德布鲁因图进行从头短读长拼接的算法》
Genome Res. 2008 May;18(5):821-9. doi: 10.1101/gr.074492.107. Epub 2008 Mar 18.
8
The RAST Server: rapid annotations using subsystems technology.RAST服务器：使用子系统技术进行快速注释。
BMC Genomics. 2008 Feb 8;9:75. doi: 10.1186/1471-2164-9-75.
9
RNAmmer: consistent and rapid annotation of ribosomal RNA genes.RNAmmer：核糖体RNA基因的一致性快速注释
Nucleic Acids Res. 2007;35(9):3100-8. doi: 10.1093/nar/gkm160. Epub 2007 Apr 22.
10
Identifying bacterial genes and endosymbiont DNA with Glimmer.使用Glimmer识别细菌基因和内共生体DNA。
Bioinformatics. 2007 Mar 15;23(6):673-9. doi: 10.1093/bioinformatics/btm009. Epub 2007 Jan 19.
Zotero 插件