opm：用于分析 OmniLog(R) 表型微阵列数据的 R 包。
opm: an R package for analysing OmniLog(R) phenotype microarray data.
机构信息
CBS-KNAW Fungal Biodiversity Centre, Bioinformatics, Uppsalalaan 8. 3584 CT Utrecht, The Netherlands.
出版信息
Bioinformatics. 2013 Jul 15;29(14):1823-4. doi: 10.1093/bioinformatics/btt291. Epub 2013 Jun 5.
SUMMARY
opm is an R package designed to analyse multidimensional OmniLog® phenotype microarray (PM) data. opm provides management, visualization and statistical analysis of PM data, including curve-parameter estimation and discretization, dedicated and customizable plots, metadata management, automated generation of textual and tabular reports, mapping of substrates to databases, batch conversion of files and export to phylogenetic software in the YAML markup language.
AVAILABILITY
opm is distributed under the GPL through the Comprehensive R Archive Network (http://cran.r-project.org/package=opm) along with a comprehensive manual and a user-friendly tutorial. Further information may be found at http://www.dsmz.de/research/microorganisms/projects/.
CONTACT
摘要
opm 是一个 R 包，旨在分析多维 OmniLog®表型微阵列 (PM) 数据。opm 提供了 PM 数据的管理、可视化和统计分析，包括曲线参数估计和离散化、专用和可定制的图形、元数据管理、自动生成文本和表格报告、将底物映射到数据库、文件批处理转换以及以 YAML 标记语言导出到系统发生软件。
可用性
opm 通过综合 R 档案网络 (http://cran.r-project.org/package=opm) 以 GPL 发布，同时提供全面的手册和用户友好的教程。更多信息可在 http://www.dsmz.de/research/microorganisms/projects/ 找到。
Zotero 插件