Bioinformatics Division, School of Bio Sciences and Technology, Vellore Institute of Technology University, Vellore, Tamil Nadu, India.
PLoS One. 2013 May 31;8(5):e64364. doi: 10.1371/journal.pone.0064364. Print 2013.
BACKGROUND: AKT1 (v-akt murine thymoma viral oncogene homologue 1) kinase is one of the most frequently activated proliferated and survival pathway of cancer. Recently it has been shown that E17K mutation in the Pleckstrin Homology (PH) domain of AKT1 protein leads to cancer by amplifying the phosphorylation and membrane localization of protein. The mutant has shown resistance to AKT1/2 inhibitor VIII drug molecule. In this study we have demonstrated the detailed structural and molecular consequences associated with the activity regulation of mutant protein. METHODS: The docking score exhibited significant loss in the interaction affinity to AKT1/2 inhibitor VIII drug molecule. Furthermore, the molecular dynamics simulation studies presented an evidence of rapid conformational drift observed in mutant structure. RESULTS: There was no stability loss in mutant as compared to native structure and the major cation-π interactions were also shown to be retained. Moreover, the active residues involved in membrane localization of protein exhibited significant rise in NHbonds formation in mutant. The rise in NHbond formation in active residues accounts for the 4-fold increase in the membrane localization potential of protein. CONCLUSION: The overall result suggested that, although the mutation did not induce any stability loss in structure, the associated pathological consequences might have occurred due to the rapid conformational drifts observed in the mutant AKT1 PH domain. GENERAL SIGNIFICANCE: The methodology implemented and the results obtained in this work will facilitate in determining the core molecular mechanisms of cancer-associated mutations and in designing their potential drug inhibitors.
背景:AKT1(v-akt 鼠胸腺瘤病毒癌基因同源物 1)激酶是癌症中最常被激活的增殖和存活途径之一。最近表明,AKT1 蛋白 Pleckstrin Homology(PH)结构域中的 E17K 突变通过放大蛋白的磷酸化和膜定位导致癌症。该突变体对 AKT1/2 抑制剂 VIII 药物分子表现出耐药性。在这项研究中,我们已经证明了与突变蛋白活性调节相关的详细结构和分子后果。
方法:对接得分显示与 AKT1/2 抑制剂 VIII 药物分子的相互作用亲和力显着丧失。此外,分子动力学模拟研究提供了证据表明突变体结构中观察到快速构象漂移。
结果:与天然结构相比,突变体没有稳定性损失,并且还显示主要的阳离子-π 相互作用得以保留。此外,参与蛋白膜定位的活性残基在突变体中表现出显著增加的 NH 键形成。活性残基中 NH 键形成的增加解释了蛋白膜定位潜力增加 4 倍。
结论:总体结果表明,尽管突变没有引起结构的任何稳定性损失,但由于在突变 AKT1 PH 结构域中观察到的快速构象漂移,可能已经发生了相关的病理后果。
一般意义:本工作中实施的方法和获得的结果将有助于确定与癌症相关的突变的核心分子机制,并设计其潜在的药物抑制剂。
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