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细胞色素 c-细胞色素 c 过氧化物酶复合物中与距离无关的电荷复合动力学:电子耦合和重组能的补偿变化。

Distance-independent charge recombination kinetics in cytochrome c-cytochrome c peroxidase complexes: compensating changes in the electronic coupling and reorganization energies.

机构信息

Department of Chemistry, Duke University, Durham, North Carolina 27708, USA.

出版信息

J Phys Chem B. 2013 Aug 8;117(31):9129-41. doi: 10.1021/jp401551t. Epub 2013 Jul 29.

DOI:10.1021/jp401551t
PMID:23895339
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3809023/
Abstract

Charge recombination rate constants vary no more than 3-fold for interprotein ET in the Zn-substituted wild type (WT) cytochrome c peroxidase (CcP):cytochrome c (Cc) complex and in complexes with four mutants of the Cc protein (i.e., F82S, F82W, F82Y, and F82I), despite large differences in the ET distance. Theoretical analysis indicates that charge recombination for all complexes involves a combination of tunneling and hopping via Trp191. For three of the five structures (WT and F82S(W)), the protein favors hopping more than that in the other two structures that have longer heme → ZnP distances (F82Y(I)). Experimentally observed biexponential ET kinetics is explained by the complex locking in alternative coupling pathways, where the acceptor hole state is either primarily localized on ZnP (slow phase) or on Trp191 (fast phase). The large conformational differences between the CcP:Cc interface for the F82Y(I) mutants compared to that the WT and F82S(W) complexes are predicted to change the reorganization energies for the CcP:Cc ET reactions because of changes in solvent exposure and interprotein ET distances. Since the recombination reaction is likely to occur in the inverted Marcus regime, an increased reorganization energy compensates the decreased role for hopping recombination (and the longer transfer distance) in the F82Y(I) mutants. Taken together, coupling pathway and reorganization energy effects for the five protein complexes explain the observed insensitivity of recombination kinetics to donor-acceptor distance and docking pose and also reveals how hopping through aromatic residues can accelerate long-range ET.

摘要

在锌取代野生型(WT)细胞色素 c 过氧化物酶(CcP):细胞色素 c(Cc)复合物以及与 Cc 蛋白的四个突变体(即 F82S、F82W、F82Y 和 F82I)的复合物中,蛋白间电子转移(ET)的电荷复合速率常数变化不超过 3 倍,尽管 ET 距离差异很大。理论分析表明,所有复合物的电荷复合都涉及通过色氨酸 191 的隧穿和跳跃的组合。对于五个结构中的三个(WT 和 F82S(W)),蛋白质更倾向于跳跃,而另外两个具有更长血红素→ZnP 距离的结构(F82Y(I))则更倾向于跳跃。实验观察到的双指数 ET 动力学可以通过复合物锁定替代耦合途径来解释,其中受体空穴状态主要位于 ZnP(慢相)或色氨酸 191(快相)。与 WT 和 F82S(W)复合物相比,F82Y(I)突变体的 CcP:Cc 界面的构象差异很大,预计会改变 CcP:Cc ET 反应的重组能,因为溶剂暴露和蛋白间 ET 距离发生变化。由于重组反应可能发生在倒 Marcus 区,增加的重组能补偿了 F82Y(I)突变体中跳跃重组(和更长的转移距离)作用的降低。总之,对于五个蛋白质复合物的耦合途径和重组能效应解释了观察到的重组动力学对供体-受体距离和对接构象的不敏感性,也揭示了通过芳香族残基跳跃如何加速长程 ET。

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