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微生物的行为多样性和低维表型空间。

Behavioral diversity in microbes and low-dimensional phenotypic spaces.

机构信息

Center for Studies in Physics and Biology and Laboratory of Living Matter, The Rockefeller University, New York, NY 10065, USA.

出版信息

Proc Natl Acad Sci U S A. 2013 Aug 20;110(34):14018-23. doi: 10.1073/pnas.1308282110. Epub 2013 Jul 29.

Abstract

Systematic studies of phenotypic diversity--required for understanding evolution--lag behind investigations of genetic diversity. Here we develop a quantitative approach to studying behavioral diversity, which we apply to swimming of the ciliate Tetrahymena. We measure the full-lifetime behavior of hundreds of individual organisms at high temporal resolution, over several generations and in diverse nutrient conditions. To characterize population diversity and temporal variability we introduce a unique statistical framework grounded in the notion of a phenotypic space of behaviors. We show that this space is effectively low dimensional with dimensions that correlate with a two-state "roaming and dwelling" model of swimming behavior. Temporal variability over the lifetime of an individual is correlated with the fraction of time spent roaming whereas diversity between individuals is correlated with the speed of roaming. Quantifying the dynamics of behavioral variation shows that behavior over the lifetime of an individual is strongly nonstationary. Analysis of behavioral dynamics between generations reveals complex patterns of behavioral heritability that point to the importance of considering correlations beyond mothers and daughters. Our description of a low-dimensional behavioral space should enable the systematic study of the evolutionary and ecological bases of phenotypic constraints. Future experimental and theoretical studies of behavioral diversity will have to account for the possibility of nonstationary and environmentally dependent behavioral dynamics that we observe.

摘要

对表型多样性(理解进化所必需的)的系统研究落后于对遗传多样性的研究。在这里,我们开发了一种定量研究行为多样性的方法,并用其研究纤毛虫四膜虫的游泳行为。我们以高时间分辨率测量了数百个个体生物在多个世代和多种营养条件下的全生命周期行为。为了描述群体多样性和时间可变性,我们引入了一个独特的统计框架,该框架基于行为表型空间的概念。我们表明,这个空间实际上是低维的,其维数与游泳行为的“漫游和停留”两态模型相关。个体一生中的时间可变性与漫游时间的比例相关,而个体之间的多样性与漫游速度相关。对行为变化的动态进行量化表明,个体一生中的行为具有很强的非平稳性。对代际间行为遗传力的分析揭示了行为遗传力的复杂模式,这表明需要考虑除母亲和女儿之外的相关性。我们对低维行为空间的描述应该能够系统地研究表型约束的进化和生态基础。未来对行为多样性的实验和理论研究将不得不考虑我们观察到的非平稳性和环境依赖性行为动态的可能性。

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