• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

相似文献

1
Behavioral diversity in microbes and low-dimensional phenotypic spaces.微生物的行为多样性和低维表型空间。
Proc Natl Acad Sci U S A. 2013 Aug 20;110(34):14018-23. doi: 10.1073/pnas.1308282110. Epub 2013 Jul 29.
2
Diversity and Coevolutionary Dynamics in High-Dimensional Phenotype Spaces.高维表型空间中的多样性与协同进化动力学
Am Nat. 2017 Feb;189(2):105-120. doi: 10.1086/689891. Epub 2016 Dec 9.
3
Nongenetic individuality, changeability, and inheritance in bacterial behavior.细菌行为中的非遗传个体性、可变性和遗传性。
Proc Natl Acad Sci U S A. 2021 Mar 30;118(13). doi: 10.1073/pnas.2023322118.
4
Beyond DNA: integrating inclusive inheritance into an extended theory of evolution.超越 DNA:将包容性遗传纳入进化的扩展理论。
Nat Rev Genet. 2011 Jun 17;12(7):475-86. doi: 10.1038/nrg3028.
5
An Individual-Centered Framework For Unravelling Genotype-Phenotype Interactions.个体中心框架解析基因型-表型相互作用。
Trends Ecol Evol. 2015 Dec;30(12):709-711. doi: 10.1016/j.tree.2015.10.003. Epub 2015 Oct 29.
6
Three-dimensional tracking of the ciliate Tetrahymena reveals the mechanism of ciliary stroke-driven helical swimming.纤毛虫四膜虫的三维追踪揭示了纤毛运动驱动的螺旋游动的机制。
Commun Biol. 2021 Oct 21;4(1):1209. doi: 10.1038/s42003-021-02756-0.
7
Phenotype Design Space Provides a Mechanistic Framework Relating Molecular Parameters to Phenotype Diversity Available for Selection.表型设计空间为将分子参数与可供选择的表型多样性相关联提供了一个机械框架。
J Mol Evol. 2023 Oct;91(5):687-710. doi: 10.1007/s00239-023-10127-y. Epub 2023 Aug 25.
8
9
Rethinking inheritance, yet again: inheritomes, contextomes and dynamic phenotypes.再谈遗传:遗传组、背景组与动态表型
J Genet. 2015 Sep;94(3):367-76. doi: 10.1007/s12041-015-0554-5.
10
Macromolecular crowding: chemistry and physics meet biology (Ascona, Switzerland, 10-14 June 2012).大分子拥挤现象:化学与物理邂逅生物学(瑞士阿斯科纳,2012年6月10日至14日)
Phys Biol. 2013 Aug;10(4):040301. doi: 10.1088/1478-3975/10/4/040301. Epub 2013 Aug 2.

引用本文的文献

1
Ciliary beating patterns map onto a low-dimensional behavioural space.纤毛跳动模式映射到一个低维行为空间。
Nat Phys. 2022 Mar;18(3):332-337. doi: 10.1038/s41567-021-01446-2. Epub 2022 Jan 10.
2
Dimensional reduction and adaptation-development-evolution relation in evolved biological systems.进化生物系统中的降维与适应-发展-进化关系。
Biophys Rev. 2024 Sep 30;16(5):639-649. doi: 10.1007/s12551-024-01233-2. eCollection 2024 Oct.
3
Revealing gene expression heterogeneity in a clonal population of through single-cell RNA sequencing.通过单细胞RNA测序揭示克隆群体中的基因表达异质性。
Biochem Biophys Rep. 2024 Apr 29;38:101720. doi: 10.1016/j.bbrep.2024.101720. eCollection 2024 Jul.
4
Canalisation and plasticity on the developmental manifold of Caenorhabditis elegans.线虫发育流形上的 canalisation 和可塑性。
Mol Syst Biol. 2023 Nov 9;19(11):e11835. doi: 10.15252/msb.202311835. Epub 2023 Oct 18.
5
Emergent programmable behavior and chaos in dynamically driven active filaments.动态驱动的活性丝中涌现的可编程行为和混沌。
Proc Natl Acad Sci U S A. 2023 Jul 11;120(28):e2304981120. doi: 10.1073/pnas.2304981120. Epub 2023 Jul 5.
6
Methods and Measures for Investigating Microscale Motility.微观尺度运动性研究的方法与措施
Integr Comp Biol. 2023 Dec 29;63(6):1485-1508. doi: 10.1093/icb/icad075.
7
Computational capability of ecological dynamics.生态动力学的计算能力。
R Soc Open Sci. 2023 Apr 19;10(4):221614. doi: 10.1098/rsos.221614. eCollection 2023 Apr.
8
Internal cues for optimizing reproduction in a varying environment.优化变环境下繁殖的内部线索。
Proc Biol Sci. 2023 Apr 26;290(1997):20230096. doi: 10.1098/rspb.2023.0096. Epub 2023 Apr 19.
9
Phenotyping single-cell motility in microfluidic confinement.在微流控限制条件下对单细胞的运动进行表型分析。
Elife. 2022 Nov 23;11:e76519. doi: 10.7554/eLife.76519.
10
An ensemble approach to the structure-function problem in microbial communities.一种解决微生物群落结构-功能问题的集成方法。
iScience. 2022 Jan 11;25(2):103761. doi: 10.1016/j.isci.2022.103761. eCollection 2022 Feb 18.

本文引用的文献

1
The geometry of locomotive behavioral states in C. elegans.线虫运动行为状态的几何形状。
PLoS One. 2013;8(3):e59865. doi: 10.1371/journal.pone.0059865. Epub 2013 Mar 28.
2
Evolutionary trade-offs, Pareto optimality, and the geometry of phenotype space.进化权衡、帕累托最优和表型空间的几何形状。
Science. 2012 Jun 1;336(6085):1157-60. doi: 10.1126/science.1217405. Epub 2012 Apr 26.
3
'Dicty dynamics': Dictyostelium motility as persistent random motion.“Dicty 动力学”:盘基网柄菌的运动是持续的随机运动。
Phys Biol. 2011 Aug;8(4):046006. doi: 10.1088/1478-3975/8/4/046006. Epub 2011 May 25.
4
Scaling and shear transformations capture beak shape variation in Darwin's finches.缩放和平移变换捕捉了达尔文雀类的喙形变化。
Proc Natl Acad Sci U S A. 2010 Feb 23;107(8):3356-60. doi: 10.1073/pnas.0911575107. Epub 2010 Feb 16.
5
Robustness of optimal intermittent search strategies in one, two, and three dimensions.一维、二维和三维空间中最优间歇性搜索策略的稳健性。
Phys Rev E Stat Nonlin Soft Matter Phys. 2009 Sep;80(3 Pt 1):031146. doi: 10.1103/PhysRevE.80.031146. Epub 2009 Sep 30.
6
Molecular and sensory basis of a food related two-state behavior in C. elegans.线虫中与食物相关的两种状态行为的分子和感觉基础。
PLoS One. 2009 Oct 23;4(10):e7584. doi: 10.1371/journal.pone.0007584.
7
High-resolution, long-term characterization of bacterial motility using optical tweezers.使用光镊对细菌运动进行高分辨率长期表征。
Nat Methods. 2009 Nov;6(11):831-5. doi: 10.1038/nmeth.1380. Epub 2009 Oct 4.
8
Robust single-particle tracking in live-cell time-lapse sequences.活细胞延时序列中稳健的单粒子追踪
Nat Methods. 2008 Aug;5(8):695-702. doi: 10.1038/nmeth.1237. Epub 2008 Jul 20.
9
Theoretical Morphology of the Coiled Shell.螺旋壳的理论形态
Science. 1965 Mar 12;147(3663):1294-5. doi: 10.1126/science.147.3663.1294.
10
Evolution and development of inflorescence architectures.花序结构的演化与发育
Science. 2007 Jun 8;316(5830):1452-6. doi: 10.1126/science.1140429. Epub 2007 May 24.

微生物的行为多样性和低维表型空间。

Behavioral diversity in microbes and low-dimensional phenotypic spaces.

机构信息

Center for Studies in Physics and Biology and Laboratory of Living Matter, The Rockefeller University, New York, NY 10065, USA.

出版信息

Proc Natl Acad Sci U S A. 2013 Aug 20;110(34):14018-23. doi: 10.1073/pnas.1308282110. Epub 2013 Jul 29.

DOI:10.1073/pnas.1308282110
PMID:23898201
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3752258/
Abstract

Systematic studies of phenotypic diversity--required for understanding evolution--lag behind investigations of genetic diversity. Here we develop a quantitative approach to studying behavioral diversity, which we apply to swimming of the ciliate Tetrahymena. We measure the full-lifetime behavior of hundreds of individual organisms at high temporal resolution, over several generations and in diverse nutrient conditions. To characterize population diversity and temporal variability we introduce a unique statistical framework grounded in the notion of a phenotypic space of behaviors. We show that this space is effectively low dimensional with dimensions that correlate with a two-state "roaming and dwelling" model of swimming behavior. Temporal variability over the lifetime of an individual is correlated with the fraction of time spent roaming whereas diversity between individuals is correlated with the speed of roaming. Quantifying the dynamics of behavioral variation shows that behavior over the lifetime of an individual is strongly nonstationary. Analysis of behavioral dynamics between generations reveals complex patterns of behavioral heritability that point to the importance of considering correlations beyond mothers and daughters. Our description of a low-dimensional behavioral space should enable the systematic study of the evolutionary and ecological bases of phenotypic constraints. Future experimental and theoretical studies of behavioral diversity will have to account for the possibility of nonstationary and environmentally dependent behavioral dynamics that we observe.

摘要

对表型多样性(理解进化所必需的)的系统研究落后于对遗传多样性的研究。在这里,我们开发了一种定量研究行为多样性的方法,并用其研究纤毛虫四膜虫的游泳行为。我们以高时间分辨率测量了数百个个体生物在多个世代和多种营养条件下的全生命周期行为。为了描述群体多样性和时间可变性,我们引入了一个独特的统计框架,该框架基于行为表型空间的概念。我们表明,这个空间实际上是低维的,其维数与游泳行为的“漫游和停留”两态模型相关。个体一生中的时间可变性与漫游时间的比例相关,而个体之间的多样性与漫游速度相关。对行为变化的动态进行量化表明,个体一生中的行为具有很强的非平稳性。对代际间行为遗传力的分析揭示了行为遗传力的复杂模式,这表明需要考虑除母亲和女儿之外的相关性。我们对低维行为空间的描述应该能够系统地研究表型约束的进化和生态基础。未来对行为多样性的实验和理论研究将不得不考虑我们观察到的非平稳性和环境依赖性行为动态的可能性。