地衣芽孢杆菌菌株9945A全注释基因组序列的初步见解。
First Insights into the Completely Annotated Genome Sequence of Bacillus licheniformis Strain 9945A.
作者信息
Rachinger Michael, Volland Sonja, Meinhardt Friedhelm, Daniel Rolf, Liesegang Heiko
机构信息
Georg-August University Göttingen, Institute of Microbiology and Genetics, Department of Genomic and Applied Microbiology & Göttingen Genomics Laboratory, Göttingen, Germany.
出版信息
Genome Announc. 2013 Aug 1;1(4):e00525-13. doi: 10.1128/genomeA.00525-13.
Abstract
Strains of the species Bacillus licheniformis are widely used in biotechnology for the production of enzymes and antibiotics (M. Schallmey, A. Singh, and O. P. Ward, Can. J. Microbiol. 50:1-17, 2004). However, research and application of B. licheniformis strains are adversely affected by poor genetic accessibility. Thus, for a closer inspection of natural competence in B. licheniformis, the genome of strain 9945A, of which derivatives are known to be naturally competent (C. B. Thorne and H. B. Stull, J. Bacteriol. 91:1012-1020, 1966), was completely sequenced and manually annotated.
摘要
地衣芽孢杆菌（Bacillus licheniformis）菌株在生物技术领域被广泛用于生产酶和抗生素（M. 沙尔梅、A. 辛格和O. P. 沃德，《加拿大微生物学杂志》50:1 - 17，2004年）。然而，地衣芽孢杆菌菌株的研究和应用受到遗传可及性差的不利影响。因此，为了更深入地研究地衣芽孢杆菌的自然感受态，对9945A菌株的基因组进行了全序列测定和人工注释，已知该菌株的衍生物具有自然感受态（C. B. 索恩和H. B. 斯图尔，《细菌学杂志》91:1012 - 1020，1966年）。
相似文献
1
First Insights into the Completely Annotated Genome Sequence of Bacillus licheniformis Strain 9945A.地衣芽孢杆菌菌株9945A全注释基因组序列的初步见解。
Genome Announc. 2013 Aug 1;1(4):e00525-13. doi: 10.1128/genomeA.00525-13.
2
Unravelling the genetic basis for competence development of auxotrophic Bacillus licheniformis 9945A strains.解析营养缺陷型地衣芽孢杆菌9945A菌株感受态发育的遗传基础。
Microbiology (Reading). 2014 Oct;160(Pt 10):2136-2147. doi: 10.1099/mic.0.079236-0. Epub 2014 Jul 9.
3
TRANSDUCTION OF BACILLUS LICHENIFORMIS AND BACILLUS SUBTILIS BY EACH OF TWO PHAGES.两种噬菌体对地衣芽孢杆菌和枯草芽孢杆菌的转导作用
J Bacteriol. 1963 Sep;86(3):452-61. doi: 10.1128/jb.86.3.452-461.1963.
4
Factors affecting transformation of Bacillus licheniformis.影响地衣芽孢杆菌转化的因素。
J Bacteriol. 1966 Mar;91(3):1012-20. doi: 10.1128/jb.91.3.1012-1020.1966.
5
TRANSFORMATION OF BACILLUS LICHENIFORMIS.地衣芽孢杆菌的转化
J Bacteriol. 1964 Mar;87(3):519-26. doi: 10.1128/jb.87.3.519-526.1964.
6
Complete genome sequence of the industrial bacterium Bacillus licheniformis and comparisons with closely related Bacillus species.工业细菌地衣芽孢杆菌的全基因组序列及其与近缘芽孢杆菌物种的比较。
Genome Biol. 2004;5(10):R77. doi: 10.1186/gb-2004-5-10-r77. Epub 2004 Sep 13.
7
Production of poly-gamma-glutamic acid by Bacillus subtilis and Bacillus licheniformis with different growth media.枯草芽孢杆菌和地衣芽孢杆菌在不同生长培养基中生产聚γ-谷氨酸。
J Nanosci Nanotechnol. 2010 Sep;10(9):5926-34. doi: 10.1166/jnn.2010.2614.
8
Conjugal transfer of transposon Tn916 from Enterococcus faecalis to Bacillus licheniformis.转座子Tn916从粪肠球菌到地衣芽孢杆菌的接合转移。
Plasmid. 1994 Mar;31(2):201-6. doi: 10.1006/plas.1994.1021.
9
Development of an Efficient Genome Editing Tool in Bacillus licheniformis Using CRISPR-Cas9 Nickase.利用 CRISPR-Cas9 核酸酶在地衣芽孢杆菌中开发高效基因组编辑工具。
Appl Environ Microbiol. 2018 Mar 1;84(6). doi: 10.1128/AEM.02608-17. Print 2018 Mar 15.
10
Cloning of the genes for penicillinase, penP and penI, of Bacillus licheniformis in some vector plasmids and their expression in Escherichia coli, Bacillus subtilis, and Bacillus licheniformis.地衣芽孢杆菌青霉素酶基因penP和penI在某些载体质粒中的克隆及其在大肠杆菌、枯草芽孢杆菌和地衣芽孢杆菌中的表达。
J Bacteriol. 1981 Sep;147(3):776-86. doi: 10.1128/jb.147.3.776-786.1981.
引用本文的文献
1
A Novel Bacitracin-like Peptide from Mangrove-Isolated NNS4-3 against MRSA and Its Genomic Insights.一种从红树林分离的NNS4-3中提取的新型类杆菌肽对耐甲氧西林金黄色葡萄球菌的作用及其基因组分析
Antibiotics (Basel). 2024 Jul 30;13(8):716. doi: 10.3390/antibiotics13080716.
2
Comprehensive genomic analysis of strain BP9, pan-genomic and genetic basis of biocontrol mechanism.菌株BP9的全基因组分析、泛基因组及生物防治机制的遗传基础
Comput Struct Biotechnol J. 2023 Oct 3;21:4647-4662. doi: 10.1016/j.csbj.2023.09.043. eCollection 2023.
3
Transcriptional Changes in the Xylose Operon in and Their Use in Fermentation Optimization.木糖操纵子在 和 中的转录变化及其在发酵优化中的应用。
Int J Mol Sci. 2019 Sep 18;20(18):4615. doi: 10.3390/ijms20184615.
4
Comparative genomic analysis of Bacillus paralicheniformis MDJK30 with its closely related species reveals an evolutionary relationship between B. paralicheniformis and B. licheniformis.比较巴氏芽胞杆菌 MDJK30 与其近缘种的基因组分析揭示了巴氏芽胞杆菌和地衣芽胞杆菌之间的进化关系。
BMC Genomics. 2019 Apr 11;20(1):283. doi: 10.1186/s12864-019-5646-9.
5
Putative antibiotic resistance genes present in extant Bacillus licheniformis and Bacillus paralicheniformis strains are probably intrinsic and part of the ancient resistome.现存的地衣芽孢杆菌和类地衣芽孢杆菌菌株中存在的假定抗生素抗性基因可能是固有基因，是古老抗性组的一部分。
PLoS One. 2019 Jan 15;14(1):e0210363. doi: 10.1371/journal.pone.0210363. eCollection 2019.
6
In silico exploration of Red Sea Bacillus genomes for natural product biosynthetic gene clusters.红海中芽孢杆菌基因组的天然产物生物合成基因簇的计算机探索。
BMC Genomics. 2018 May 22;19(1):382. doi: 10.1186/s12864-018-4796-5.
7
A CRISPR-Cas9-Based Toolkit for Fast and Precise In Vivo Genetic Engineering of Phages.基于 CRISPR-Cas9 的噬菌体体内基因快速精准工程工具包
Viruses. 2018 May 4;10(5):241. doi: 10.3390/v10050241.
8
Characterization of Bacillus Subtilis Viruses vB_BsuM-Goe2 and vB_BsuM-Goe3.枯草芽孢杆菌病毒vB_BsuM-Goe2和vB_BsuM-Goe3的特性分析
Viruses. 2017 Jun 12;9(6):146. doi: 10.3390/v9060146.
9
Nitrous oxide emission by the non-denitrifying, nitrate ammonifier Bacillus licheniformis.非反硝化硝酸盐氨化菌地衣芽孢杆菌的一氧化二氮排放
BMC Genomics. 2016 Jan 19;17:68. doi: 10.1186/s12864-016-2382-2.
10
Genome-based identification of active prophage regions by next generation sequencing in Bacillus licheniformis DSM13.通过下一代测序对地衣芽孢杆菌DSM13中活性原噬菌体区域进行基于基因组的鉴定。
PLoS One. 2015 Mar 26;10(3):e0120759. doi: 10.1371/journal.pone.0120759. eCollection 2015.
本文引用的文献
1
Facilitation of direct conditional knockout of essential genes in Bacillus licheniformis DSM13 by comparative genetic analysis and manipulation of genetic competence.通过比较遗传分析和遗传转化操作促进地衣芽孢杆菌 DSM13 中必需基因的直接条件性敲除。
Appl Environ Microbiol. 2010 Aug;76(15):5046-57. doi: 10.1128/AEM.00660-10. Epub 2010 Jun 11.
2
RNAmmer: consistent and rapid annotation of ribosomal RNA genes.RNAmmer：核糖体RNA基因的一致性快速注释
Nucleic Acids Res. 2007;35(9):3100-8. doi: 10.1093/nar/gkm160. Epub 2007 Apr 22.
3
Complete genome sequence of the industrial bacterium Bacillus licheniformis and comparisons with closely related Bacillus species.工业细菌地衣芽孢杆菌的全基因组序列及其与近缘芽孢杆菌物种的比较。
Genome Biol. 2004;5(10):R77. doi: 10.1186/gb-2004-5-10-r77. Epub 2004 Sep 13.
4
The complete genome sequence of Bacillus licheniformis DSM13, an organism with great industrial potential.地衣芽孢杆菌DSM13的全基因组序列，一种具有巨大工业潜力的生物。
J Mol Microbiol Biotechnol. 2004;7(4):204-11. doi: 10.1159/000079829.
5
Developments in the use of Bacillus species for industrial production.芽孢杆菌属在工业生产中的应用进展。
Can J Microbiol. 2004 Jan;50(1):1-17. doi: 10.1139/w03-076.
6
YACOP: Enhanced gene prediction obtained by a combination of existing methods.YACOP：通过现有方法组合获得的增强型基因预测。
In Silico Biol. 2003;3(4):441-51.
7
TRANSFORMATION OF BACILLUS LICHENIFORMIS.地衣芽孢杆菌的转化
J Bacteriol. 1964 Mar;87(3):519-26. doi: 10.1128/jb.87.3.519-526.1964.
8
Production of glutamyl polypeptide by Bacillus subtilis.枯草芽孢杆菌生产谷氨酰多肽。
J Bacteriol. 1954 Sep;68(3):307-15. doi: 10.1128/jb.68.3.307-315.1954.
9
The ERGO genome analysis and discovery system.ERGO基因组分析与发现系统
Nucleic Acids Res. 2003 Jan 1;31(1):164-71. doi: 10.1093/nar/gkg148.
10
Artemis: sequence visualization and annotation.阿尔忒弥斯：序列可视化与注释
Bioinformatics. 2000 Oct;16(10):944-5. doi: 10.1093/bioinformatics/16.10.944.
Zotero 插件