颤藻目蓝细菌ESFC-1菌株的基因组序列草图
Draft Genome Sequence of an Oscillatorian Cyanobacterium, Strain ESFC-1.
作者信息
Everroad R Craig, Woebken Dagmar, Singer Steven W, Burow Luke C, Kyrpides Nikos, Woyke Tanja, Goodwin Lynne, Detweiler Angela, Prufert-Bebout Leslie, Pett-Ridge Jennifer
机构信息
Exobiology Branch, NASA Ames Research Center, Moffett Field, California, USA.
出版信息
Genome Announc. 2013 Aug 1;1(4):e00527-13. doi: 10.1128/genomeA.00527-13.
Abstract
The nonheterocystous filamentous cyanobacterium strain ESFC-1 has recently been isolated from a marine microbial mat system, where it was identified as belonging to a recently discovered lineage of active nitrogen-fixing microorganisms. Here, we report the draft genome sequence of this isolate. The assembly consists of 3 scaffolds and contains 5,632,035 bp with a GC content of 46.5%.
摘要
非异形胞丝状蓝细菌菌株ESFC-1最近从一个海洋微生物垫系统中分离出来，在该系统中它被鉴定为属于最近发现的活跃固氮微生物谱系。在此，我们报告该分离株的基因组草图序列。该组装由3个支架组成，包含5,632,035碱基对，GC含量为46.5%。
相似文献
1
Draft Genome Sequence of an Oscillatorian Cyanobacterium, Strain ESFC-1.颤藻目蓝细菌ESFC-1菌株的基因组序列草图
Genome Announc. 2013 Aug 1;1(4):e00527-13. doi: 10.1128/genomeA.00527-13.
2
Permanent draft genome of strain ESFC-1: ecological genomics of a newly discovered lineage of filamentous diazotrophic cyanobacteria.菌株ESFC-1的永久基因组草图：丝状固氮蓝细菌新发现谱系的生态基因组学
Stand Genomic Sci. 2016 Aug 24;11(1):53. doi: 10.1186/s40793-016-0174-6. eCollection 2016.
3
Draft Genome Sequence of Filamentous Marine Cyanobacterium Lyngbya confervoides Strain BDU141951.丝状海洋蓝藻卷曲席藻菌株BDU141951的基因组草图序列
Genome Announc. 2015 Mar 5;3(2):e00066-15. doi: 10.1128/genomeA.00066-15.
4
Draft Genome Assembly of Filamentous Brackish Cyanobacterium Limnoraphis robusta Strain CS-951.丝状微咸蓝细菌粗壮湖蓝丝藻CS-951菌株的基因组草图组装
Genome Announc. 2015 Sep 3;3(5):e00846-15. doi: 10.1128/genomeA.00846-15.
5
Draft genome sequence of the cyanobacterium Sphaerospermopsis aphanizomenoides BCCUSP55 from the Brazilian semiarid region reveals potential for anti-cancer applications.巴西半干旱地区鱼腥藻 BCCUSP55 的草案基因组序列揭示了其在抗癌应用方面的潜力。
Arch Microbiol. 2021 Dec 4;204(1):4. doi: 10.1007/s00203-021-02602-1.
6
Draft Genome Sequence of Tolypothrix boutellei Strain VB521301.束丝藻菌株VB521301的基因组序列草图
Genome Announc. 2015 Feb 19;3(1):e00001-15. doi: 10.1128/genomeA.00001-15.
7
Draft Genome Sequence of sp. Strain HL-69, Isolated from a Benthic Microbial Mat from a Magnesium Sulfate-Dominated Hypersaline Lake.从以硫酸镁为主的超盐湖底栖微生物垫中分离出的sp.菌株HL-69的基因组序列草图
Genome Announc. 2018 Feb 8;6(6):e01583-17. doi: 10.1128/genomeA.01583-17.
8
Draft Genome Sequence of sp. Strain LVM 105, a Nitrogen-Fixing Symbiont of (Michx.) Greene.（米契尔）格林氏豆科植物的固氮共生菌——LVM 105菌株的基因组序列草图
Microbiol Resour Announc. 2019 Apr 4;8(14):e00132-19. doi: 10.1128/MRA.00132-19.
9
Draft genome sequence of sp. strain Oc8 isolated from nodule.从根瘤中分离得到的Oc8菌株的基因组序列草图。
Curr Res Microb Sci. 2021 Oct 15;2:100074. doi: 10.1016/j.crmicr.2021.100074. eCollection 2021 Dec.
10
Identification of a novel cyanobacterial group as active diazotrophs in a coastal microbial mat using NanoSIMS analysis.利用 NanoSIMS 分析鉴定沿海微生物席中一种新型蓝细菌群体为活性固氮菌。
ISME J. 2012 Jul;6(7):1427-39. doi: 10.1038/ismej.2011.200. Epub 2012 Jan 12.
引用本文的文献
1
High-Quality Draft Genome Sequences of Four Lignocellulose-Degrading Bacteria Isolated from Puerto Rican Forest Soil: sp., sp., sp., and sp.从波多黎各森林土壤中分离出的四种木质纤维素降解细菌的高质量基因组草图序列：[细菌名称1]种、[细菌名称2]种、[细菌名称3]种和[细菌名称4]种
Genome Announc. 2017 May 4;5(18):e00300-17. doi: 10.1128/genomeA.00300-17.
2
Permanent draft genome of strain ESFC-1: ecological genomics of a newly discovered lineage of filamentous diazotrophic cyanobacteria.菌株ESFC-1的永久基因组草图：丝状固氮蓝细菌新发现谱系的生态基因组学
Stand Genomic Sci. 2016 Aug 24;11(1):53. doi: 10.1186/s40793-016-0174-6. eCollection 2016.
3
Light Regimes Shape Utilization of Extracellular Organic C and N in a Cyanobacterial Biofilm.光照条件影响蓝藻生物膜对胞外有机碳和氮的利用
mBio. 2016 Jun 28;7(3):e00650-16. doi: 10.1128/mBio.00650-16.
4
Cyanobacterial reuse of extracellular organic carbon in microbial mats.微生物席中蓝细菌对胞外有机碳的再利用。
ISME J. 2016 May;10(5):1240-51. doi: 10.1038/ismej.2015.180. Epub 2015 Oct 23.
5
Revisiting N₂ fixation in Guerrero Negro intertidal microbial mats with a functional single-cell approach.采用功能性单细胞方法重新审视格雷罗内格罗潮间带微生物垫中的固氮作用。
ISME J. 2015 Feb;9(2):485-96. doi: 10.1038/ismej.2014.144. Epub 2014 Oct 10.
本文引用的文献
1
Physiological ecology of cyanobacteria in microbial mats and other communities.微生物席及其他群落中蓝细菌的生理生态学
New Phytol. 1995 Sep;131(1):1-32. doi: 10.1111/j.1469-8137.1995.tb03051.x.
2
Improving genome assemblies by sequencing PCR products with PacBio.利用 PacBio 测序 PCR 产物提高基因组组装质量。
Biotechniques. 2012 Jul;53(1):61-2. doi: 10.2144/0000113891.
3
Identification of a novel cyanobacterial group as active diazotrophs in a coastal microbial mat using NanoSIMS analysis.利用 NanoSIMS 分析鉴定沿海微生物席中一种新型蓝细菌群体为活性固氮菌。
ISME J. 2012 Jul;6(7):1427-39. doi: 10.1038/ismej.2011.200. Epub 2012 Jan 12.
4
Molecular and morphological characterization of cyanobacterial diversity in the stromatolites of Highborne Cay, Bahamas.巴哈马群岛海伯恩礁叠层石中蓝藻多样性的分子和形态特征
ISME J. 2009 May;3(5):573-87. doi: 10.1038/ismej.2008.129. Epub 2009 Jan 15.
5
Velvet: algorithms for de novo short read assembly using de Bruijn graphs.《天鹅绒：使用德布鲁因图进行从头短读长拼接的算法》
Genome Res. 2008 May;18(5):821-9. doi: 10.1101/gr.074492.107. Epub 2008 Mar 18.
6
ALLPATHS: de novo assembly of whole-genome shotgun microreads.ALLPATHS：全基因组鸟枪法测序短读段的从头组装。
Genome Res. 2008 May;18(5):810-20. doi: 10.1101/gr.7337908. Epub 2008 Mar 13.
7
The RAST Server: rapid annotations using subsystems technology.RAST服务器：使用子系统技术进行快速注释。
BMC Genomics. 2008 Feb 8;9:75. doi: 10.1186/1471-2164-9-75.
8
The integrated microbial genomes (IMG) system.综合微生物基因组（IMG）系统
Nucleic Acids Res. 2006 Jan 1;34(Database issue):D344-8. doi: 10.1093/nar/gkj024.
9
Diel interactions of oxygenic photosynthesis and n(2) fixation (acetylene reduction) in a marine microbial mat community.海洋微生物席群落中好氧光合作用和 n(2)固定（乙炔还原）的昼夜相互作用。
Appl Environ Microbiol. 1987 Oct;53(10):2353-62. doi: 10.1128/aem.53.10.2353-2362.1987.
10
Solexa Ltd.索雷克斯有限公司
Pharmacogenomics. 2004 Jun;5(4):433-8. doi: 10.1517/14622416.5.4.433.
Zotero 插件