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亚洲狮完整线粒体基因组解析 Panthera 内的系统发育地位。

Complete mitogenome of Asiatic lion resolves phylogenetic status within Panthera.

机构信息

Gujarat State Biotechnology Mission, Department of Science and Technology, Government of Gujarat, Block-11, 9th Floor, Udyog Bhavan, Sector 11, Gandhinagar 382 017, Gujarat, India.

出版信息

BMC Genomics. 2013 Aug 23;14:572. doi: 10.1186/1471-2164-14-572.

Abstract

BACKGROUND

The origin, evolution and speciation of the lion, has been subject of interest, debate and study. The present surviving lions of the genus Panthera comprise of eight sub-species inclusive of Asiatic lion Panthera leo persica of India's Gir forest. Except for the Asiatic lion, the other seven subspecies are found in different parts of Africa. There have been different opinions regarding the phylogenetic status of Panthera leo, as well as classifying lions of different geographic regions into subspecies and races. In the present study, mitogenome sequence of P. leo persica deduced, using Ion Torrent PGM to assess phylogeny and evolution which may play an increasingly important role in conservation biology.

RESULTS

The mtDNA sequence of P. leo persica is 17,057 bp in length with 40.8% GC content. Annotation of mitogenome revealed total 37 genes, including 13 protein coding, 2 rRNA and 22 tRNA. Phylogenetic analysis based on whole mitogenome, suggests Panthera pardus as a neighbouring species to P. leo with species divergence at ~2.96 mya.

CONCLUSION

This work presents first report on complete mitogenome of Panthera leo persica. It sheds light on the phylogenetic and evolutionary status within and across Felidae members. The result compared and evaluated with earlier reports of Felidae shows alteration of phylogenetic status and species evolution. This study may provide information on genetic diversity and population stability.

摘要

背景

狮子的起源、进化和物种形成一直是人们关注、争论和研究的课题。目前,生存于 Panthera 属的狮子包括 8 个亚种,其中包括印度吉尔森林的亚洲狮 Panthera leo persica。除了亚洲狮外,其他 7 个亚种分布在非洲的不同地区。关于 Panthera leo 的系统发育地位以及将不同地理区域的狮子分为亚种和品种,一直存在不同的观点。在本研究中,使用 Ion Torrent PGM 推断了亚洲狮的线粒体基因组序列,以评估其在进化和进化中的作用,这可能在保护生物学中发挥越来越重要的作用。

结果

亚洲狮的 mtDNA 序列长 17057bp,GC 含量为 40.8%。线粒体基因组注释显示共 37 个基因,包括 13 个蛋白质编码基因、2 个 rRNA 和 22 个 tRNA。基于整个线粒体基因组的系统发育分析表明,豹亚种是狮子的近缘种,两者的物种分化发生在约 296 万年前。

结论

本研究首次报道了亚洲狮的完整线粒体基因组。它揭示了猫科动物内部和之间的系统发育和进化地位。与猫科动物的早期报道进行比较和评估表明,系统发育地位和物种进化发生了变化。本研究可为遗传多样性和种群稳定性提供信息。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b4f9/3765570/5d5b8388c2f5/1471-2164-14-572-1.jpg

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