• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

土壤杆菌属 SmR1 Fnr 同源物控制细胞色素组成电子传递链。

The Herbaspirillum seropedicae SmR1 Fnr orthologs controls the cytochrome composition of the electron transport chain.

机构信息

Department of Biochemistry and Molecular Biology, Universidade Federal do Paraná, Curitiba-PR, Brazil.

出版信息

Sci Rep. 2013;3:2544. doi: 10.1038/srep02544.

DOI:10.1038/srep02544
PMID:23996052
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3759049/
Abstract

The transcriptional regulatory protein Fnr, acts as an intracellular redox sensor regulating a wide range of genes in response to changes in oxygen levels. Genome sequencing of Herbaspirillum seropedicae SmR1 revealed the presence of three fnr-like genes. In this study we have constructed single, double and triple fnr deletion mutant strains of H. seropedicae. Transcriptional profiling in combination with expression data from reporter fusions, together with spectroscopic analysis, demonstrates that the Fnr1 and Fnr3 proteins not only regulate expression of the cbb3-type respiratory oxidase, but also control the cytochrome content and other component complexes required for the cytochrome c-based electron transport pathway. Accordingly, in the absence of the three Fnr paralogs, growth is restricted at low oxygen tensions and nitrogenase activity is impaired. Our results suggest that the H. seropedicae Fnr proteins are major players in regulating the composition of the electron transport chain in response to prevailing oxygen concentrations.

摘要

转录调节蛋白 Fnr 作为一种细胞内氧化还原传感器,可响应氧水平的变化调节广泛的基因。 Herbaspirillum seropedicae SmR1 的基因组测序揭示了存在三个 fnr 样基因。在这项研究中,我们构建了 H. seropedicae 的单个、双个和三个 fnr 缺失突变株。转录谱分析结合报告基因融合的表达数据以及光谱分析表明,Fnr1 和 Fnr3 蛋白不仅调节 cbb3 型呼吸氧化酶的表达,还控制细胞色素含量和细胞色素 c 为基础的电子传递途径所需的其他组件复合物。因此,在缺乏三个 Fnr 旁系同源物的情况下,在低氧张力下生长受到限制,固氮酶活性受损。我们的结果表明,H. seropedicae 的 Fnr 蛋白是调节电子传递链组成以响应流行氧浓度的主要参与者。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1905/3759049/e14fd9b6f92f/srep02544-f6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1905/3759049/3cf1affe51ff/srep02544-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1905/3759049/cd16f5410ff0/srep02544-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1905/3759049/d33d946f8a1c/srep02544-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1905/3759049/f13ae9254b0f/srep02544-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1905/3759049/1ef2b3e43348/srep02544-f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1905/3759049/e14fd9b6f92f/srep02544-f6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1905/3759049/3cf1affe51ff/srep02544-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1905/3759049/cd16f5410ff0/srep02544-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1905/3759049/d33d946f8a1c/srep02544-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1905/3759049/f13ae9254b0f/srep02544-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1905/3759049/1ef2b3e43348/srep02544-f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1905/3759049/e14fd9b6f92f/srep02544-f6.jpg

相似文献

1
The Herbaspirillum seropedicae SmR1 Fnr orthologs controls the cytochrome composition of the electron transport chain.土壤杆菌属 SmR1 Fnr 同源物控制细胞色素组成电子传递链。
Sci Rep. 2013;3:2544. doi: 10.1038/srep02544.
2
Enhanced oxygen consumption in Herbaspirillum seropedicae fnr mutants leads to increased NifA mediated transcriptional activation.血清固氮螺菌fnr突变体中耗氧量增加导致NifA介导的转录激活增强。
BMC Microbiol. 2015 May 7;15:95. doi: 10.1186/s12866-015-0432-6.
3
Hierarchical interactions between Fnr orthologs allows fine-tuning of transcription in response to oxygen in Herbaspirillum seropedicae.Fnr 同源物之间的层次相互作用允许精细调节 Herbaspirillum seropedicae 中对氧气的转录反应。
Nucleic Acids Res. 2018 May 4;46(8):3953-3966. doi: 10.1093/nar/gky142.
4
The Role of Fnr Paralogs in Controlling Anaerobic Metabolism in the Diazotroph Paenibacillus polymyxa WLY78.Fnr 同源物在固氮菌蜡状芽孢杆菌 WLY78 厌氧代谢调控中的作用。
Appl Environ Microbiol. 2020 May 5;86(10). doi: 10.1128/AEM.03012-19.
5
Transcriptional regulation of main metabolic pathways of cyoA, cydB, fnr, and fur gene knockout Escherichia coli in C-limited and N-limited aerobic continuous cultures.C 限制和 N 限制好氧连续培养中 cyoA、cydB、fnr 和 fur 基因敲除大肠杆菌主要代谢途径的转录调控。
Microb Cell Fact. 2011 Jan 27;10:3. doi: 10.1186/1475-2859-10-3.
6
Oxygen regulation of the Escherichia coli cytochrome d oxidase (cydAB) operon: roles of multiple promoters and the Fnr-1 and Fnr-2 binding sites.大肠杆菌细胞色素d氧化酶(cydAB)操纵子的氧气调节:多个启动子以及Fnr-1和Fnr-2结合位点的作用
Mol Microbiol. 2000 Sep;37(6):1456-69. doi: 10.1046/j.1365-2958.2000.02100.x.
7
The NtrY-NtrX two-component system is involved in controlling nitrate assimilation in Herbaspirillum seropedicae strain SmR1.NtrY-NtrX双组分系统参与调控血清型草螺菌SmR1菌株中的硝酸盐同化作用。
FEBS J. 2016 Nov;283(21):3919-3930. doi: 10.1111/febs.13897. Epub 2016 Oct 5.
8
Identification and characterization of PhbF: a DNA binding protein with regulatory role in the PHB metabolism of Herbaspirillum seropedicae SmR1.鉴定和表征 PhbF:一种在 Herbaspirillum seropedicae SmR1 的 PHB 代谢中具有调节作用的 DNA 结合蛋白。
BMC Microbiol. 2011 Oct 14;11:230. doi: 10.1186/1471-2180-11-230.
9
PHB Biosynthesis Counteracts Redox Stress in .PHB生物合成可抵消……中的氧化还原应激。 (你提供的原文不完整,“in”后面缺少具体内容)
Front Microbiol. 2018 Mar 15;9:472. doi: 10.3389/fmicb.2018.00472. eCollection 2018.
10
Cytochrome o (cyoABCDE) and d (cydAB) oxidase gene expression in Escherichia coli is regulated by oxygen, pH, and the fnr gene product.大肠杆菌中细胞色素o(cyoABCDE)和d(cydAB)氧化酶基因的表达受氧气、pH值和fnr基因产物的调控。
J Bacteriol. 1990 Nov;172(11):6333-8. doi: 10.1128/jb.172.11.6333-6338.1990.

引用本文的文献

1
The Study of Microbial Physiology Under Microoxic Conditions Is Critical but Neglected.微氧条件下微生物生理学的研究至关重要但却被忽视。
Environ Microbiol Rep. 2025 Jun;17(3):e70108. doi: 10.1111/1758-2229.70108.
2
The role of NtrC in the adaptation of Herbaspirillum seropedicae SmR1 to nitrogen limitation and to nitrate.NtrC 在 Herbaspirillum seropedicae SmR1 适应氮限制和硝酸盐中的作用。
Arch Microbiol. 2024 Jun 19;206(7):310. doi: 10.1007/s00203-024-04044-x.
3
Disrupting hierarchical control of nitrogen fixation enables carbon-dependent regulation of ammonia excretion in soil diazotrophs.

本文引用的文献

1
PePPER: a webserver for prediction of prokaryote promoter elements and regulons.PePPER:一个用于预测原核生物启动子元件和调控子的网络服务器。
BMC Genomics. 2012 Jul 2;13:299. doi: 10.1186/1471-2164-13-299.
2
RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics.RobiNA:一个基于 RNA-Seq 的转录组学的用户友好、集成的软件解决方案。
Nucleic Acids Res. 2012 Jul;40(Web Server issue):W622-7. doi: 10.1093/nar/gks540. Epub 2012 Jun 8.
3
Composition and function of cytochrome c biogenesis System II.细胞色素 c 生物发生系统 II 的组成和功能。
打破固氮的层级控制有助于依赖碳的方式调控土壤固氮菌的氨排泄。
PLoS Genet. 2021 Jun 10;17(6):e1009617. doi: 10.1371/journal.pgen.1009617. eCollection 2021 Jun.
4
The Role of Fnr Paralogs in Controlling Anaerobic Metabolism in the Diazotroph Paenibacillus polymyxa WLY78.Fnr 同源物在固氮菌蜡状芽孢杆菌 WLY78 厌氧代谢调控中的作用。
Appl Environ Microbiol. 2020 May 5;86(10). doi: 10.1128/AEM.03012-19.
5
PHB Biosynthesis Counteracts Redox Stress in .PHB生物合成可抵消……中的氧化还原应激。 (你提供的原文不完整,“in”后面缺少具体内容)
Front Microbiol. 2018 Mar 15;9:472. doi: 10.3389/fmicb.2018.00472. eCollection 2018.
6
Hierarchical interactions between Fnr orthologs allows fine-tuning of transcription in response to oxygen in Herbaspirillum seropedicae.Fnr 同源物之间的层次相互作用允许精细调节 Herbaspirillum seropedicae 中对氧气的转录反应。
Nucleic Acids Res. 2018 May 4;46(8):3953-3966. doi: 10.1093/nar/gky142.
7
RNA-seq transcriptional profiling of Herbaspirillum seropedicae colonizing wheat (Triticum aestivum) roots.定殖于小麦(普通小麦)根际的固氮螺菌的RNA测序转录谱分析
Plant Mol Biol. 2016 Apr;90(6):589-603. doi: 10.1007/s11103-016-0430-6. Epub 2016 Jan 22.
8
Enhanced oxygen consumption in Herbaspirillum seropedicae fnr mutants leads to increased NifA mediated transcriptional activation.血清固氮螺菌fnr突变体中耗氧量增加导致NifA介导的转录激活增强。
BMC Microbiol. 2015 May 7;15:95. doi: 10.1186/s12866-015-0432-6.
FEBS J. 2011 Nov;278(22):4179-88. doi: 10.1111/j.1742-4658.2011.08374.x. Epub 2011 Oct 20.
4
Genome of Herbaspirillum seropedicae strain SmR1, a specialized diazotrophic endophyte of tropical grasses.巴西固氮螺菌 SmR1 菌株基因组,一种热带禾本科植物专性共生固氮内生菌。
PLoS Genet. 2011 May;7(5):e1002064. doi: 10.1371/journal.pgen.1002064. Epub 2011 May 12.
5
MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.MEGA5:用于最大似然法、进化距离法和最大简约法的分子进化遗传学分析。
Mol Biol Evol. 2011 Oct;28(10):2731-9. doi: 10.1093/molbev/msr121. Epub 2011 May 4.
6
Differential expression analysis for sequence count data.差异表达分析序列计数数据。
Genome Biol. 2010;11(10):R106. doi: 10.1186/gb-2010-11-10-r106. Epub 2010 Oct 27.
7
The diheme cytochrome c(4) from Vibrio cholerae is a natural electron donor to the respiratory cbb(3) oxygen reductase.霍乱弧菌的二血红素细胞色素 c(4)是呼吸 cbb(3)氧还原酶的天然电子供体。
Biochemistry. 2010 Sep 7;49(35):7494-503. doi: 10.1021/bi1004574.
8
Comparing the substrate specificities of cytochrome c biogenesis Systems I and II: bioenergetics.比较细胞色素 c 生物发生系统 I 和 II 的底物特异性:生物能量学。
FEBS J. 2010 Feb;277(3):726-37. doi: 10.1111/j.1742-4658.2009.07517.x. Epub 2009 Dec 29.
9
The Pfam protein families database.Pfam 蛋白质家族数据库。
Nucleic Acids Res. 2010 Jan;38(Database issue):D211-22. doi: 10.1093/nar/gkp985. Epub 2009 Nov 17.
10
PROSITE, a protein domain database for functional characterization and annotation.PROSITE,一个用于功能特征描述和注释的蛋白质域数据库。
Nucleic Acids Res. 2010 Jan;38(Database issue):D161-6. doi: 10.1093/nar/gkp885. Epub 2009 Oct 25.