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采用比较蛋白质组学和转录组学方法研究GA4在日本杏花芽休眠解除中的积极作用。

Comparative proteomic and transcriptomic approaches to address the active role of GA4 in Japanese apricot flower bud dormancy release.

作者信息

Zhuang Weibing, Gao Zhihong, Wang Liangju, Zhong Wenjun, Ni Zhaojun, Zhang Zhen

机构信息

College of Horticulture, Nanjing Agricultural University, No. 1 Weigang, Nanjing 210095, PR China.

出版信息

J Exp Bot. 2013 Nov;64(16):4953-66. doi: 10.1093/jxb/ert284. Epub 2013 Sep 7.

Abstract

Hormones are closely associated with dormancy in deciduous fruit trees, and gibberellins (GAs) are known to be particularly important. In this study, we observed that GA4 treatment led to earlier bud break in Japanese apricot. To understand better the promoting effect of GA4 on the dormancy release of Japanese apricot flower buds, proteomic and transcriptomic approaches were used to analyse the mechanisms of dormancy release following GA4 treatment, based on two-dimensional gel electrophoresis (2-DE) and digital gene expression (DGE) profiling, respectively. More than 600 highly reproducible protein spots (P<0.05) were detected and, following GA4 treatment, 38 protein spots showed more than a 2-fold difference in expression, and 32 protein spots were confidently identified according to the databases. Compared with water treatment, many proteins that were associated with energy metabolism and oxidation-reduction showed significant changes after GA4 treatment, which might promote dormancy release. We observed that genes at the mRNA level associated with energy metabolism and oxidation-reduction also played an important role in this process. Analysis of the functions of the identified proteins and genes and the related metabolic pathways would provide a comprehensive proteomic and transcriptomic view of the coordination of dormancy release after GA4 treatment in Japanese apricot flower buds.

摘要

激素与落叶果树的休眠密切相关,已知赤霉素(GAs)尤为重要。在本研究中,我们观察到GA4处理导致日本杏芽提前萌发。为了更好地理解GA4对日本杏花芽休眠解除的促进作用,分别基于二维凝胶电泳(2-DE)和数字基因表达(DGE)分析,采用蛋白质组学和转录组学方法来分析GA4处理后休眠解除的机制。检测到600多个高度可重复的蛋白质点(P<0.05),GA4处理后,38个蛋白质点的表达差异超过2倍,根据数据库可靠鉴定出32个蛋白质点。与水处理相比,许多与能量代谢和氧化还原相关的蛋白质在GA4处理后发生了显著变化,这可能促进休眠解除。我们观察到,与能量代谢和氧化还原相关的mRNA水平基因在这一过程中也发挥了重要作用。对鉴定出的蛋白质和基因的功能以及相关代谢途径进行分析,将为GA4处理后日本杏花芽休眠解除的协调提供全面的蛋白质组学和转录组学视角。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/285b/3830480/0ce24342b28b/exbotj_ert284_f0001.jpg

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