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大豆叶绿体 16S-23S rDNA 间隔区的序列研究：与其他被子植物序列的比较及基因间区通用 RNA 二级结构模型的提出。

Sequence studies on the soybean chloroplast 16S-23S rDNA spacer region : Comparison with other angiosperm sequences and proposal of a generalized RNA secondary structure model for the intergenic regions.

机构信息

Department of Biology, University of Windsor, N9B 3P4, Windsor, Ontario, Canada.

出版信息

Plant Mol Biol. 1987 Jan;10(1):65-82. doi: 10.1007/BF00014187.

DOI:10.1007/BF00014187
PMID:24277464
Abstract

The sequence of the ribosomal spacer region of soybean chloroplast DNA including the 3' end of the 16S rRNA gene, the tRNA(Ala) and tRNA(Ile) genes (but not their introns), the three intergenic regions and the 5' end of the 23S rRNA gene, has been determined. This sequence has been compared to corresponding regions of other angiosperm chloroplast DNAs. Secondary structure models are proposed for the entirety of the intergenic regions a, b and c and for the flanking rRNA regions. A model for a common secondary structure of the ribosomal spacer intergenic regions from chloroplasts of higher plants is proposed, which is supported by comparative evidence.

摘要

已测定了包括 16S rRNA 基因 3'端、tRNA(Ala)和 tRNA(Ile)基因（但不包括它们的内含子）、三个基因间隔区以及 23S rRNA 基因 5'端的大豆叶绿体 DNA 核糖体间隔区序列。已将该序列与其他被子植物叶绿体 DNA 的相应区域进行了比较。提出了 a、b 和 c 三个基因间隔区以及侧翼 rRNA 区域的整体二级结构模型。根据比较证据，提出了一个高等植物叶绿体核糖体间隔区基因间隔区共有二级结构模型。

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本文引用的文献

1
Sequence organization of the chloroplast ribosomal spacer of Chlamydomonas reinhardii: uninterrupted tRNAile and tRNAala genes and extensive secondary structure.莱茵衣藻叶绿体核糖体间隔区的序列组织：连续的 tRNAile 和 tRNAala 基因和广泛的二级结构。
Plant Mol Biol. 1986 Jul;6(4):265-70. doi: 10.1007/BF00015232.
2
Characterization of soybean chloroplast ribosomal RNA genes.大豆叶绿体核糖体 RNA 基因的特征。
Curr Genet. 1984 Dec;9(1):99-105. doi: 10.1007/BF00396210.
3
A gene coding for tRNA is located near 5' terminus of 16S rRNA gene in Zea mays chloroplast genome.
在玉米叶绿体基因组中，tRNA 基因编码位于 16S rRNA 基因的 5' 末端附近。
Proc Natl Acad Sci U S A. 1981 Aug;78(8):4748-52. doi: 10.1073/pnas.78.8.4748.
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The complete nucleotide sequence of the tobacco chloroplast genome: its gene organization and expression.烟草叶绿体基因组的完整核苷酸序列：其基因组织与表达
EMBO J. 1986 Sep;5(9):2043-2049. doi: 10.1002/j.1460-2075.1986.tb04464.x.
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Conservation of RNA secondary structures in two intron families including mitochondrial-, chloroplast- and nuclear-encoded members.两个内含子家族中RNA二级结构的保守性，包括线粒体、叶绿体和核编码成员。
EMBO J. 1983;2(1):33-8. doi: 10.1002/j.1460-2075.1983.tb01376.x.
6
The primary and secondary structure of yeast 26S rRNA.酵母26S核糖体RNA的一级和二级结构。
Nucleic Acids Res. 1981 Dec 21;9(24):6935-52. doi: 10.1093/nar/9.24.6935.
7
Identification of common molecular subsequences.常见分子子序列的鉴定
J Mol Biol. 1981 Mar 25;147(1):195-7. doi: 10.1016/0022-2836(81)90087-5.
8
The complete nucleotide sequence of 16S ribosomal RNA gene from tobacco chloroplasts.烟草叶绿体16S核糖体RNA基因的完整核苷酸序列。
Gene. 1982 Feb;17(2):213-8. doi: 10.1016/0378-1119(82)90074-9.
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Sequence of a putative promoter region for the rRNA genes of tobacco chloroplast DNA.烟草叶绿体DNA的rRNA基因推定启动子区域的序列
Nucleic Acids Res. 1981 Oct 24;9(20):5399-406. doi: 10.1093/nar/9.20.5399.
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