• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

真空紫外圆二色性作为核酸中螺旋手性的指标。

Vacuum ultraviolet circular dichroism as an indicator of helical handedness in nucleic acids.

作者信息

Williams A L, Cheong C, Tinoco I, Clark L B

出版信息

Nucleic Acids Res. 1986 Aug 26;14(16):6649-59. doi: 10.1093/nar/14.16.6649.

DOI:10.1093/nar/14.16.6649
PMID:2428015
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC311671/
Abstract

Calculated circular dichroism spectra are presented for double-stranded polynucleotides of regular sequences in A-RNA, A-DNA, B-DNA, and Z-DNA conformations. Quantum mechanical matrix method calculations were carried out in the near and vacuum ultraviolet regions. In the near UV, the calculated spectra agreed qualitatively with the measured spectra. However in the far and vacuum UV, the calculated CD compared nearly quantitatively with the experimental spectra. The calculations show that the sign of the CD in the vacuum UV, in contrast to that in the near UV, can be correlated with the handedness of the helix.

摘要

本文给出了具有A-RNA、A-DNA、B-DNA和Z-DNA构象的规则序列双链多核苷酸的计算圆二色光谱。采用量子力学矩阵方法在近紫外和真空紫外区域进行了计算。在近紫外区域,计算光谱与测量光谱在定性上相符。然而,在远紫外和真空紫外区域,计算得到的圆二色光谱与实验光谱几乎在定量上相符。计算结果表明,与近紫外区域不同,真空紫外区域圆二色光谱的符号与螺旋的手性相关。

相似文献

1
Vacuum ultraviolet circular dichroism as an indicator of helical handedness in nucleic acids.真空紫外圆二色性作为核酸中螺旋手性的指标。
Nucleic Acids Res. 1986 Aug 26;14(16):6649-59. doi: 10.1093/nar/14.16.6649.
2
Helical structure and circular dichroism spectra of DNA: a theoretical study.DNA 的螺旋结构和圆二色性光谱:理论研究。
J Phys Chem A. 2013 Jan 10;117(1):42-55. doi: 10.1021/jp3085556. Epub 2012 Dec 31.
3
Investigating local conformations of double-stranded DNA by low-energy circular dichroism of pyrrolo-cytosine.通过吡咯 - 胞嘧啶的低能圆二色性研究双链DNA的局部构象
Proc Natl Acad Sci U S A. 2005 May 17;102(20):7169-73. doi: 10.1073/pnas.0502359102. Epub 2005 May 9.
4
Similarities and Differences between RNA and DNA Double-Helical Structures in Circular Dichroism Spectroscopy: A SAC-CI Study.圆二色光谱中RNA与DNA双螺旋结构的异同:单激发组态相互作用研究
J Phys Chem A. 2016 Nov 17;120(45):9008-9018. doi: 10.1021/acs.jpca.6b08023. Epub 2016 Nov 3.
5
Evidence for Z-form RNA by vacuum UV circular dichroism.真空紫外圆二色性证明Z型RNA的存在。
Nucleic Acids Res. 1985 Jul 11;13(13):4983-9. doi: 10.1093/nar/13.13.4983.
6
Base tilt of DNA in various conformations from flow linear dichroism.
Biochemistry. 1985 Aug 27;24(18):4802-6. doi: 10.1021/bi00339a013.
7
The vacuum UV CD bands of repeating DNA sequences are dependent on sequence and conformation.重复DNA序列的真空紫外圆二色光谱带取决于序列和构象。
Biopolymers. 1990 Feb 5;29(2):317-23. doi: 10.1002/bip.360290204.
8
Z-DNA: vacuum ultraviolet circular dichroism.Z型DNA:真空紫外圆二色性
Proc Natl Acad Sci U S A. 1981 Aug;78(8):4801-4. doi: 10.1073/pnas.78.8.4801.
9
First-principles calculations of protein circular dichroism in the far-ultraviolet and beyond.蛋白质在远紫外及更短波长区域圆二色性的第一性原理计算
Chirality. 2006 May 15;18(5):340-7. doi: 10.1002/chir.20264.
10
CD of homopolymer DNA-RNA hybrid duplexes and triplexes containing A-T or A-U base pairs.包含A-T或A-U碱基对的均聚物DNA-RNA杂交双链体和三链体的光盘。
Nucleic Acids Res. 1986 Dec 22;14(24):10071-90. doi: 10.1093/nar/14.24.10071.

引用本文的文献

1
Dinucleotides as simple models of the base stacking-unstacking component of DNA 'breathing' mechanisms.二核苷酸作为DNA“呼吸”机制中碱基堆积-解堆积成分的简单模型。
Nucleic Acids Res. 2021 Feb 26;49(4):1872-1885. doi: 10.1093/nar/gkab015.
2
Local DNA Base Conformations and Ligand Intercalation in DNA Constructs Containing Optical Probes.含光学探针的 DNA 结构中局部 DNA 碱基构象和配体嵌入。
Biophys J. 2019 Sep 17;117(6):1101-1115. doi: 10.1016/j.bpj.2019.08.006. Epub 2019 Aug 12.
3
Synchrotron-radiation vacuum-ultraviolet circular dichroism spectroscopy in structural biology: an overview.结构生物学中的同步辐射真空紫外圆二色光谱:综述
Biophys Physicobiol. 2019 Feb 6;16:41-58. doi: 10.2142/biophysico.16.0_41. eCollection 2019.
4
Synonymous nucleotide modification of the gene affects both mRNA characteristics and translation of the encoded hERG ion channel.基因同义核苷酸修饰既影响 mRNA 特征,又影响编码 hERG 离子通道的翻译。
J Biol Chem. 2018 Aug 3;293(31):12120-12136. doi: 10.1074/jbc.RA118.001805. Epub 2018 Jun 15.
5
Isotope effect on the circular dichroism spectrum of methyl α-D-glucopyranoside in aqueous solution.同位素对α-D-甲基吡喃葡萄糖苷水溶液圆二色光谱的影响。
Sci Rep. 2015 Dec 14;5:17900. doi: 10.1038/srep17900.
6
Applications of synchrotron-based spectroscopic techniques in studying nucleic acids and nucleic acid-functionalized nanomaterials.基于同步加速器的光谱技术在研究核酸及核酸功能化纳米材料中的应用。
Adv Mater. 2014 Dec 10;26(46):7849-72. doi: 10.1002/adma.201304891. Epub 2014 Sep 10.
7
The transition between the B and Z conformations of DNA investigated by targeted molecular dynamics simulations with explicit solvation.通过具有显式溶剂化的靶向分子动力学模拟研究DNA的B构象和Z构象之间的转变。
Biophys J. 2006 Oct 15;91(8):2976-90. doi: 10.1529/biophysj.106.083667.
8
Helical nature of poly(dI-dC).poly(dI-dC). Vibrational circular dichroism results.聚(dI-dC)·聚(dI-dC)的螺旋性质。振动圆二色性结果。
Nucleic Acids Res. 1993 Aug 25;21(17):4127-32. doi: 10.1093/nar/21.17.4127.
9
Stabilization of the Z' form of poly(dGdC):poly(dGdC) in solution by multivalent ions relates to the ZII form in crystals.多价离子使溶液中的聚(dGdC):聚(dGdC)的Z' 形式稳定,这与晶体中的ZII形式有关。
Nucleic Acids Res. 1990 Apr 25;18(8):2141-8. doi: 10.1093/nar/18.8.2141.
10
The vacuum UV CD spectra of G.G.C triplexes.G.G.C三链体的真空紫外圆二色光谱。
Nucleic Acids Res. 1992 Aug 11;20(15):3859-64. doi: 10.1093/nar/20.15.3859.

本文引用的文献

1
Left-handed double helical DNA: variations in the backbone conformation.左手双螺旋DNA:主链构象的变化
Science. 1981 Jan 9;211(4478):171-6. doi: 10.1126/science.7444458.
2
Salt-induced conformational changes of poly(dA-dT).盐诱导的聚(dA-dT)构象变化。
Nucleic Acids Res. 1980 Sep 11;8(17):3965-73. doi: 10.1093/nar/8.17.3965.
3
Polymorphism of DNA double helices.DNA双螺旋的多态性
J Mol Biol. 1980 Oct 15;143(1):49-72. doi: 10.1016/0022-2836(80)90124-2.
4
Natural DNA sequences can form left-handed helices in low salt solution under conditions of topological constraint.在拓扑学限制条件下,天然DNA序列在低盐溶液中可形成左手螺旋结构。
J Mol Biol. 1982 Dec 5;162(2):473-93. doi: 10.1016/0022-2836(82)90539-3.
5
Conformational transitions of poly(dA-dC).poly(dG-dT) induced by high salt or in ethanolic solution.高盐或乙醇溶液诱导的聚(dA-dC)·聚(dG-dT)的构象转变
Nucleic Acids Res. 1982 Feb 11;10(3):1081-91. doi: 10.1093/nar/10.3.1081.
6
A Z-like form of poly(dA-dC).poly(dG-dT) in solution?溶液中聚(dA-dC)·聚(dG-dT)的Z型结构?
Nucleic Acids Res. 1982 Feb 11;10(3):1071-80. doi: 10.1093/nar/10.3.1071.
7
Z-DNA: vacuum ultraviolet circular dichroism.Z型DNA:真空紫外圆二色性
Proc Natl Acad Sci U S A. 1981 Aug;78(8):4801-4. doi: 10.1073/pnas.78.8.4801.
8
'Z-RNA'--a left-handed RNA double helix.“Z-RNA”——一种左手螺旋RNA双螺旋结构。
Nature. 1984;311(5986):584-6. doi: 10.1038/311584a0.
9
Matrix-method calculation of linear and circular dichroism spectra of nucleic acids and polynucleotides.核酸和多核苷酸线性及圆二色光谱的矩阵法计算
Biopolymers. 1984 Mar;23(3):435-70. doi: 10.1002/bip.360230305.
10
Comparison of the conformation of poly(dI-dC) with poly(dI-dbr5C) and the B and Z forms of poly(dG-dC). One- and two-dimensional NMR studies.聚(dI-dC)与聚(dI-dbr5C)的构象以及聚(dG-dC)的B型和Z型的比较。一维和二维核磁共振研究。
Biochemistry. 1984 Nov 6;23(23):5439-46. doi: 10.1021/bi00318a010.