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使用合成寡脱氧核苷酸和引物 cDNA 作为豌豆(Pisum sativum L.)RNA 和基因组 DNA 序列的探针。

Use of synthetic oligodeoxyribonucleotides and primed cDNA as probes for pea (Pisum sativum L.) RNA and genomic DNA sequences.

机构信息

Department of Botany, University of Durham, South Road, DH1 3LE, Durham, U.K..

出版信息

Plant Mol Biol. 1984 Mar;3(2):73-81. doi: 10.1007/BF00040031.

DOI:10.1007/BF00040031
PMID:24310302
Abstract

Two oligonucleotide sequences were synthesised by a solid-phase phosphotriester method. One of these sequences, A was a copy of part of a characterised cDNA clone encoding the basic subunit of legumin, a seed storage protein of Pisum sativum L. (garden pea); the other sequence B was predicted to be complementary to the 5' region of legumin mRNA on the basis of the amino acid sequence of legumin acidic subunits and most likely codon usage. Sequence A was shown to hybridise specifically to a legumin cDNA clone and to legumin mRNA. Sequence B did not hybridise specifically to legumin mRNA and was concluded not to be correctly complementary to legumin mRNA. Sequence A was used as a primer for cDNA synthesis using pea seed mRNA as a template. The cDNA so produced hybridised specifically to a legumin cDNA clone, to legumin mRNA, and to sequences encoding legumin in a restriction digest of pea genomic DNA. It is suggested that such oligonucleotide primed cDNAs may be of general value in probing eukaryotic genomic DNA.

摘要

两个寡核苷酸序列通过固相磷酸三酯法合成。其中一个序列 A 是豌豆贮藏蛋白豆球蛋白碱性亚基编码部分 cDNA 克隆的拷贝;另一个序列 B 根据豆球蛋白酸性亚基的氨基酸序列和最可能的密码子使用情况,预测是豆球蛋白 mRNA 5' 区的互补序列。序列 A 特异性杂交到豆球蛋白 cDNA 克隆和豆球蛋白 mRNA。序列 B 没有特异性杂交到豆球蛋白 mRNA,因此推断它与豆球蛋白 mRNA 不互补。序列 A 用作豌豆种子 mRNA 为模板的 cDNA 合成的引物。所产生的 cDNA 特异性杂交到豆球蛋白 cDNA 克隆、豆球蛋白 mRNA 以及豌豆基因组 DNA 限制酶切物中编码豆球蛋白的序列。建议此类寡核苷酸引发的 cDNA 可能在探测真核基因组 DNA 方面具有普遍价值。

相似文献

1
Use of synthetic oligodeoxyribonucleotides and primed cDNA as probes for pea (Pisum sativum L.) RNA and genomic DNA sequences.使用合成寡脱氧核苷酸和引物 cDNA 作为豌豆(Pisum sativum L.)RNA 和基因组 DNA 序列的探针。
Plant Mol Biol. 1984 Mar;3(2):73-81. doi: 10.1007/BF00040031.
2
Two genes encoding 'minor' legumin polypeptides in pea (Pisum sativum L.). Characterization and complete sequence of the LegJ gene.豌豆(Pisum sativum L.)中两个编码“小”豆球蛋白多肽的基因。LegJ基因的特征及完整序列
Biochem J. 1988 Feb 15;250(1):15-24. doi: 10.1042/bj2500015.
3
Nucleotide sequence of a cDNA clone of Brassica napus 12S storage protein shows homology with legumin from Pisum sativum.甘蓝型油菜 12S 贮藏蛋白 cDNA 克隆的核苷酸序列与豌豆 legumin 同源。
Plant Mol Biol. 1985 May;5(3):191-201. doi: 10.1007/BF00015683.
4
Characterisation of the storage protein subunits synthesised in vitro by polyribosomes and RNA from developing pea (Pisum sativum L.) : I. Legumin.豌豆(Pisum sativum L.)发育过程中多核糖体和 RNA 体外合成的贮藏蛋白亚基的特性。I. 豆球蛋白。
Planta. 1980 Feb;148(1):49-56. doi: 10.1007/BF00385441.
5
Two cDNA clones coding for the legumin protein of Pisum sativum L. contain sequence repeats.两个编码豌豆 legumin 蛋白的 cDNA 克隆含有序列重复。
Plant Mol Biol. 1984 Mar;3(2):91-6. doi: 10.1007/BF00040033.
6
Sequence of a pseudogene in the legumin gene family of pea (Pisum sativum L.).豌豆(Pisum sativum L.)豆球蛋白基因家族中一个假基因的序列。
Nucleic Acids Res. 1985 Jun 25;13(12):4527-38. doi: 10.1093/nar/13.12.4527.
7
Regulation of Legumin Levels in Developing Pea Seeds under Conditions of Sulfur Deficiency: Rates of Legumin Synthesis and Levels of Legumin mRNA.在硫缺乏条件下发育中的豌豆种子中豆球蛋白水平的调节:豆球蛋白合成的速率和豆球蛋白 mRNA 的水平。
Plant Physiol. 1983 Jan;71(1):47-54. doi: 10.1104/pp.71.1.47.
8
Immunoelectrophoretic analysis of seed proteins from Pisum sativum L.免疫电泳分析豌豆种子蛋白质。
Theor Appl Genet. 1978 Nov;53(6):241-50. doi: 10.1007/BF00280986.
9
Isoelectric-focusing properties and carbohydrate content of pea (Pisum sativum) legumin.豌豆(Pisum sativum)豆球蛋白的等电聚焦特性及碳水化合物含量
Biochem J. 1980 Feb 1;185(2):497-503. doi: 10.1042/bj1850497.
10
The complete nucleotide sequence of a legumin gene from pea (Pisum sativum L.).来自豌豆(Pisum sativum L.)的豆球蛋白基因的完整核苷酸序列。
Nucleic Acids Res. 1984 Jun 11;12(11):4493-506. doi: 10.1093/nar/12.11.4493.

本文引用的文献

1
Cell free synthesis of some storage protein subunits by polyribosomes and RNA isolated from developing seeds of pea (Pisum sativum L.).无细胞体系中豌豆发育种子多聚核糖体和 RNA 合成部分贮藏蛋白亚基。
Planta. 1979 Jan;144(5):455-62. doi: 10.1007/BF00380122.
2
Synthesis of complementary DNAs to partially purified mRNAs coding for the storage proteins of Pisum sativum (L).合成与豌豆(Pisum sativum (L))贮藏蛋白编码的部分纯化信使核糖核酸互补的脱氧核糖核酸。
Biochim Biophys Acta. 1980 Nov 14;610(1):81-95. doi: 10.1016/0005-2787(80)90058-1.
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The use of synthetic oligonucleotides as hybridization probes. II. Hybridization of oligonucleotides of mixed sequence to rabbit beta-globin DNA.
合成寡核苷酸作为杂交探针的应用。II. 混合序列寡核苷酸与兔β-珠蛋白DNA的杂交
Nucleic Acids Res. 1981 Feb 25;9(4):879-94. doi: 10.1093/nar/9.4.879.
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Rapid synthesis of oligodeoxyribonucleotides. VII. Solid phase synthesis of oligodeoxyribonucleotides by a continuous flow phosphotriester method on a kieselguhr-polyamide support.寡脱氧核糖核苷酸的快速合成。VII. 在硅藻土-聚酰胺载体上通过连续流动磷酸三酯法固相合成寡脱氧核糖核苷酸。
Nucleic Acids Res. 1982 Oct 25;10(20):6243-54. doi: 10.1093/nar/10.20.6243.
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Resolving the functions of overlapping viral genes by site-specific mutagenesis at a mRNA splice site.通过在mRNA剪接位点进行位点特异性诱变来解析重叠病毒基因的功能。
Nature. 1982 Feb 4;295(5848):380-4. doi: 10.1038/295380a0.
6
Chicken histone H5: selection of a cDNA recombinant using an extended synthetic primer.鸡组蛋白H5:使用延伸合成引物筛选cDNA重组体。
Nucleic Acids Res. 1982 Mar 11;10(5):1495-502. doi: 10.1093/nar/10.5.1495.
7
Synthetic deoxyoligonucleotides as general probes for chloroplast transfer RNA genes.合成脱氧寡核苷酸作为叶绿体转移RNA基因的通用探针。
Nucleic Acids Res. 1982 Dec 20;10(24):8191-210. doi: 10.1093/nar/10.24.8191.
8
Sequencing end-labeled DNA with base-specific chemical cleavages.通过碱基特异性化学切割对末端标记的DNA进行测序。
Methods Enzymol. 1980;65(1):499-560. doi: 10.1016/s0076-6879(80)65059-9.
9
Total synthesis of a human leukocyte interferon gene.人白细胞干扰素基因的全合成
Nature. 1981 Aug 20;292(5825):756-62. doi: 10.1038/292756a0.
10
A general method for detection and characterization of an mRNA using an oligonucleotide probe.一种使用寡核苷酸探针检测和表征mRNA的通用方法。
J Biol Chem. 1981 Jan 25;256(2):1023-8.