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高油甘蓝型油菜品种中与含油量相关的QTL鉴定及用于甘蓝型油菜QTL比较的高密度整合图谱构建

Identification of QTLs associated with oil content in a high-oil Brassica napus cultivar and construction of a high-density consensus map for QTLs comparison in B. napus.

作者信息

Wang Xiaodong, Wang Hao, Long Yan, Li Dianrong, Yin Yongtai, Tian Jianhua, Chen Li, Liu Liezhao, Zhao Weiguo, Zhao Yajun, Yu Longjiang, Li Maoteng

机构信息

Institute of Resource Biology and Biotechnology, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, China.

出版信息

PLoS One. 2013 Dec 2;8(12):e80569. doi: 10.1371/journal.pone.0080569. eCollection 2013.

Abstract

Increasing seed oil content is one of the most important goals in breeding of rapeseed (B. napus L.). To dissect the genetic basis of oil content in B. napus, a large and new double haploid (DH) population containing 348 lines was obtained from a cross between 'KenC-8' and 'N53-2', two varieties with >10% difference in seed oil content, and this population was named the KN DH population. A genetic linkage map consisting of 403 markers was constructed, which covered a total length of 1783.9 cM with an average marker interval of 4.4 cM. The KN DH population was phenotyped in eight natural environments and subjected to quantitative trait loci (QTL) analysis for oil content. A total of 63 identified QTLs explaining 2.64-17.88% of the phenotypic variation were identified, and these QTLs were further integrated into 24 consensus QTLs located on 11 chromosomes using meta-analysis. A high-density consensus map with 1335 marker loci was constructed by combining the KN DH map with seven other published maps based on the common markers. Of the 24 consensus QTLs in the KN DH population, 14 were new QTLs including five new QTLs in A genome and nine in C genome. The analysis revealed that a larger population with significant differences in oil content gave a higher power detecting new QTLs for oil content, and the construction of the consensus map provided a new clue for comparing the QTLs detected in different populations. These findings enriched our knowledge of QTLs for oil content and should be a potential in marker-assisted breeding of B. napus.

摘要

提高种子含油量是油菜(甘蓝型油菜)育种中最重要的目标之一。为了解析甘蓝型油菜含油量的遗传基础,从种子含油量相差超过10%的两个品种‘KenC - 8’和‘N53 - 2’的杂交后代中获得了一个由348个株系组成的大型新双单倍体(DH)群体,该群体被命名为KN DH群体。构建了一个由403个标记组成的遗传连锁图谱,其总长度为1783.9厘摩,平均标记间隔为4.4厘摩。对KN DH群体在8个自然环境中进行表型分析,并对含油量进行数量性状位点(QTL)分析。共鉴定出63个QTL,解释了2.64% - 17.88%的表型变异,这些QTL通过元分析进一步整合为位于11条染色体上的24个一致性QTL。通过将KN DH图谱与其他7个基于共同标记的已发表图谱相结合,构建了一个包含1335个标记位点的高密度一致性图谱。在KN DH群体的24个一致性QTL中,有14个是新的QTL,其中A基因组中有5个新QTL,C基因组中有9个。分析表明,含油量差异显著的更大群体在检测含油量新QTL方面具有更高的功效,一致性图谱的构建为比较不同群体中检测到的QTL提供了新线索。这些发现丰富了我们对含油量QTL的认识,在甘蓝型油菜的标记辅助育种中具有潜在应用价值。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6dd1/3846612/7b08bf314189/pone.0080569.g001.jpg

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