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通过脉冲场凝胶电泳(PFGE)和肠细菌重复基因间一致性(ERIC-PCR)分析食源性病原体分离的沙门氏菌菌株的遗传多样性。

Genetic diversity of food-isolated Salmonella strains through Pulsed Field Gel Electrophoresis (PFGE) and Enterobacterial Repetitive Intergenic Consensus (ERIC-PCR).

机构信息

Unité de recherche Toxicologie - Microbiologie Environnementale et Santé, Faculté des Sciences de Sfax, Université de Sfax, Sfax, Tunisia ; Laboratoire de Microbiologie, Département agroalimentaire Agrocampus Ouest, Rennes, France.

出版信息

PLoS One. 2013 Dec 3;8(12):e81315. doi: 10.1371/journal.pone.0081315. eCollection 2013.

Abstract

All over the world, the incidence of Salmonella spp contamination on different food sources like broilers, clams and cow milk has increased rapidly in recent years. The multifaceted properties of Salomnella serovars allow the microorganism to grow and multiply in various food matrices, even under adverse conditions. Therefore, methods are needed to detect and trace this pathogen along the entire food supply network. In the present work, PFGE and ERIC-PCR were used to subtype 45 Salmonella isolates belonging to different serovars and derived from different food origins. Among these isolates, S. Enteritidis and S. Kentucky were found to be the most predominant serovars. The Discrimination Index obtained by ERIC-PCR (0.85) was slightly below the acceptable confidence value. The best discriminatory ability was observed when PFGE typing method was used alone (DI = 0.94) or combined with ERIC-PCR (DI = 0.93). A wide variety of profiles was observed between the different serovars using PFGE or/and ERIC-PCR. This diversity is particularly important when the sample origins are varied and even within the same sampling origin.

摘要

近年来,世界各地不同食物来源(如肉鸡、蛤蜊和牛奶)的沙门氏菌污染发生率迅速上升。沙门氏菌血清型的多面特性使得该微生物能够在各种食物基质中生长和繁殖,即使在不利条件下也是如此。因此,需要在整个食品供应网络中检测和追踪这种病原体的方法。在本研究中,使用 PFGE 和 ERIC-PCR 对来自不同食物来源的 45 株不同血清型的沙门氏菌进行了亚分型。在这些分离株中,发现肠炎沙门氏菌和肯塔基沙门氏菌是最主要的血清型。ERIC-PCR 获得的鉴别指数(0.85)略低于可接受的置信值。当单独使用 PFGE 分型方法(DI=0.94)或与 ERIC-PCR 联合使用(DI=0.93)时,观察到最佳的区分能力。PFGE 或/和 ERIC-PCR 用于不同血清型时观察到各种各样的图谱。当样品来源不同甚至在同一采样来源内时,这种多样性尤为重要。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f02c/3849149/b6211d7343ba/pone.0081315.g001.jpg

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