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使用非均匀快速傅里叶变换对冷冻电子断层扫描图像进行迭代重建。

Iterative reconstruction of cryo-electron tomograms using nonuniform fast Fourier transforms.

机构信息

Max-Planck Institute of Biochemistry, Department of Molecular Structural Biology, D-82152 Martinsried, Germany; Computer Aided Medical Procedures (CAMP), Technische Universität München, Germany.

Max-Planck Institute of Biochemistry, Department of Molecular Structural Biology, D-82152 Martinsried, Germany.

出版信息

J Struct Biol. 2014 Mar;185(3):309-16. doi: 10.1016/j.jsb.2013.12.001. Epub 2013 Dec 8.

Abstract

Algorithms for three-dimensional (3D) reconstruction of objects based on their projections are essential in various biological and medical imaging modalities. In cryo-electron tomography (CET) a major challenge for reconstruction is the limited range of projection angles, which manifests itself as a "missing wedge" of data in Fourier space making the reconstruction problem ill-posed. Here, we apply an iterative reconstruction method that makes use of nonuniform fast Fourier transform (NUFFT) to the reconstruction of cryo-electron tomograms. According to several measures the reconstructions are superior to those obtained using conventional methods, most notably weighted backprojection. Most importantly, we show that it is possible to fill in partially the unsampled region in Fourier space with meaningful information without making assumptions about the data or applying prior knowledge. As a consequence, particles of known structure can be localized with higher confidence in cryotomograms and subtomogram averaging yields higher resolution densities.

摘要

基于物体投影的三维(3D)重建算法在各种生物和医学成像模式中至关重要。在冷冻电子断层扫描(CET)中,重建的一个主要挑战是投影角度的有限范围,这表现在傅立叶空间中的“缺失楔形”数据,使得重建问题不适定。在这里,我们将非均匀快速傅里叶变换(NUFFT)的迭代重建方法应用于冷冻电子断层扫描的重建。根据几种度量标准,重建结果优于使用传统方法获得的结果,尤其是加权反投影。最重要的是,我们表明,有可能在不假设数据或应用先验知识的情况下,用有意义的信息填充傅立叶空间中部分未采样的区域。因此,可以在冷冻断层扫描中以更高的置信度定位已知结构的粒子,并且子断层平均化可以产生更高分辨率的密度。

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