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长非编码 RNA 和染色质修饰物:它们在表观遗传密码中的位置。

Long non-coding RNAs and chromatin modifiers: their place in the epigenetic code.

机构信息

Center for Applied Medical Research; University of Navarra; Pamplona, Spain.

出版信息

Epigenetics. 2014 Jan;9(1):21-6. doi: 10.4161/epi.27472. Epub 2013 Dec 13.

DOI:10.4161/epi.27472
PMID:24335342
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3928181/
Abstract

The emergence of long non-coding RNAs (lncRNAs) has shaken up our conception of gene expression regulation, as lncRNAs take prominent positions as components of cellular networks. Several cellular processes involve lncRNAs, and a significant number of them have been shown to function in cooperation with chromatin modifying enzymes to promote epigenetic activation or silencing of gene expression. Different model mechanisms have been proposed to explain how lncRNAs achieve regulation of gene expression by interacting with the epigenetic machinery. Here we describe these models in light of the current knowledge of lncRNAs, such as Xist and HOTAIR, and discuss recent literature on the role of the three-dimensional structure of the genome in the mechanism of action of lncRNAs and chromatin modifiers.

摘要

长非编码 RNA(lncRNAs)的出现颠覆了我们对基因表达调控的认识,因为 lncRNAs 作为细胞网络的组成部分占据了重要地位。几个细胞过程都涉及 lncRNAs,并且已经证明其中许多与染色质修饰酶合作,促进基因表达的表观遗传激活或沉默。已经提出了不同的模型机制来解释 lncRNAs 如何通过与表观遗传机制相互作用来实现对基因表达的调控。在这里,我们根据 Xist 和 HOTAIR 等 lncRNAs 的现有知识描述了这些模型,并讨论了关于基因组三维结构在 lncRNAs 和染色质修饰物作用机制中的作用的最新文献。

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本文引用的文献

1
High-resolution Xist binding maps reveal two-step spreading during X-chromosome inactivation.高分辨率 Xist 结合图谱揭示了 X 染色体失活过程中的两步扩散。
Nature. 2013 Dec 19;504(7480):465-469. doi: 10.1038/nature12719. Epub 2013 Oct 27.
2
Pint lincRNA connects the p53 pathway with epigenetic silencing by the Polycomb repressive complex 2.Pint长链非编码RNA通过多梳抑制复合物2将p53信号通路与表观遗传沉默联系起来。
Genome Biol. 2013;14(9):R104. doi: 10.1186/gb-2013-14-9-r104.
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The Xist lncRNA exploits three-dimensional genome architecture to spread across the X chromosome.Xist lncRNA 利用三维基因组结构在 X 染色体上扩散。
Science. 2013 Aug 16;341(6147):1237973. doi: 10.1126/science.1237973. Epub 2013 Jul 4.
4
lincRNAs: genomics, evolution, and mechanisms.长链非编码 RNA:基因组学、进化与机制。
Cell. 2013 Jul 3;154(1):26-46. doi: 10.1016/j.cell.2013.06.020.
5
Jpx RNA activates Xist by evicting CTCF.Jpx RNA 通过驱逐 CTCF 来激活 Xist。
Cell. 2013 Jun 20;153(7):1537-51. doi: 10.1016/j.cell.2013.05.028.
6
linc-UBC1 physically associates with polycomb repressive complex 2 (PRC2) and acts as a negative prognostic factor for lymph node metastasis and survival in bladder cancer.长链非编码RNA linc-UBC1与多梳抑制复合物2(PRC2)存在物理相互作用,并作为膀胱癌淋巴结转移和生存的负性预后因素。
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Structure and function of long noncoding RNAs in epigenetic regulation.长非编码 RNA 在表观遗传调控中的结构与功能。
Nat Struct Mol Biol. 2013 Mar;20(3):300-7. doi: 10.1038/nsmb.2480.
8
A pseudogene long-noncoding-RNA network regulates PTEN transcription and translation in human cells.一个假基因长非编码 RNA 网络调节人细胞中的 PTEN 转录和翻译。
Nat Struct Mol Biol. 2013 Apr;20(4):440-6. doi: 10.1038/nsmb.2516. Epub 2013 Feb 24.
9
Noncoding RNA and Polycomb recruitment.非编码 RNA 和 Polycomb 募集。
RNA. 2013 Apr;19(4):429-42. doi: 10.1261/rna.037598.112. Epub 2013 Feb 19.
10
The NeST long ncRNA controls microbial susceptibility and epigenetic activation of the interferon-γ locus.NeST 长 ncRNA 控制微生物易感性和干扰素-γ基因座的表观遗传激活。
Cell. 2013 Feb 14;152(4):743-54. doi: 10.1016/j.cell.2013.01.015.