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全球无脊椎动物基因组联盟(GIGA):开发社区资源以研究多样化的无脊椎动物基因组。

The Global Invertebrate Genomics Alliance (GIGA): developing community resources to study diverse invertebrate genomes.

出版信息

J Hered. 2014 Jan-Feb;105(1):1-18. doi: 10.1093/jhered/est084.

Abstract

Over 95% of all metazoan (animal) species comprise the "invertebrates," but very few genomes from these organisms have been sequenced. We have, therefore, formed a "Global Invertebrate Genomics Alliance" (GIGA). Our intent is to build a collaborative network of diverse scientists to tackle major challenges (e.g., species selection, sample collection and storage, sequence assembly, annotation, analytical tools) associated with genome/transcriptome sequencing across a large taxonomic spectrum. We aim to promote standards that will facilitate comparative approaches to invertebrate genomics and collaborations across the international scientific community. Candidate study taxa include species from Porifera, Ctenophora, Cnidaria, Placozoa, Mollusca, Arthropoda, Echinodermata, Annelida, Bryozoa, and Platyhelminthes, among others. GIGA will target 7000 noninsect/nonnematode species, with an emphasis on marine taxa because of the unrivaled phyletic diversity in the oceans. Priorities for selecting invertebrates for sequencing will include, but are not restricted to, their phylogenetic placement; relevance to organismal, ecological, and conservation research; and their importance to fisheries and human health. We highlight benefits of sequencing both whole genomes (DNA) and transcriptomes and also suggest policies for genomic-level data access and sharing based on transparency and inclusiveness. The GIGA Web site (http://giga.nova.edu) has been launched to facilitate this collaborative venture.

摘要

超过 95%的后生动物(动物)物种构成了“无脊椎动物”,但这些生物的基因组很少被测序。因此,我们成立了一个“全球无脊椎动物基因组联盟”(GIGA)。我们的意图是建立一个由不同科学家组成的协作网络,以应对与跨大分类群的基因组/转录组测序相关的主要挑战(例如,物种选择、样本收集和存储、序列组装、注释、分析工具)。我们旨在促进标准,以促进无脊椎动物基因组学的比较方法和国际科学界的合作。候选研究分类群包括多孔动物门、栉水母动物门、刺胞动物门、扁盘动物门、软体动物门、节肢动物门、棘皮动物门、环节动物门、苔藓动物门和扁形动物门等物种。GIGA 将针对 7000 种非昆虫/非线虫物种,重点关注海洋物种,因为海洋中具有无与伦比的系统发育多样性。选择用于测序的无脊椎动物的优先事项包括但不限于它们的系统发育位置;与生物体、生态和保护研究的相关性;以及它们对渔业和人类健康的重要性。我们强调了测序整个基因组(DNA)和转录组的好处,并根据透明度和包容性建议了基因组级数据访问和共享的政策。GIGA 网站(http://giga.nova.edu)已经推出,以促进这一合作。

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