Franz Benjamin, Xue Chuan, Painter Kevin J, Erban Radek
Mathematical Institute, University of Oxford, Radcliffe Observatory Quarter, Woodstock Road, Oxford, OX2 6GG, UK,
Bull Math Biol. 2014 Feb;76(2):377-400. doi: 10.1007/s11538-013-9924-4. Epub 2013 Dec 18.
Hybrid models of chemotaxis combine agent-based models of cells with partial differential equation models of extracellular chemical signals. In this paper, travelling wave properties of hybrid models of bacterial chemotaxis are investigated. Bacteria are modelled using an agent-based (individual-based) approach with internal dynamics describing signal transduction. In addition to the chemotactic behaviour of the bacteria, the individual-based model also includes cell proliferation and death. Cells consume the extracellular nutrient field (chemoattractant), which is modelled using a partial differential equation. Mesoscopic and macroscopic equations representing the behaviour of the hybrid model are derived and the existence of travelling wave solutions for these models is established. It is shown that cell proliferation is necessary for the existence of non-transient (stationary) travelling waves in hybrid models. Additionally, a numerical comparison between the wave speeds of the continuum models and the hybrid models shows good agreement in the case of weak chemotaxis and qualitative agreement for the strong chemotaxis case. In the case of slow cell adaptation, we detect oscillating behaviour of the wave, which cannot be explained by mean-field approximations.
趋化性的混合模型将基于主体的细胞模型与细胞外化学信号的偏微分方程模型相结合。本文研究了细菌趋化性混合模型的行波特性。细菌采用基于主体(个体)的方法进行建模,其内部动力学描述信号转导。除了细菌的趋化行为外,基于个体的模型还包括细胞增殖和死亡。细胞消耗细胞外营养场(化学引诱剂),该营养场采用偏微分方程进行建模。推导了表示混合模型行为的介观和宏观方程,并确定了这些模型行波解的存在性。结果表明,细胞增殖对于混合模型中非瞬态(静止)行波的存在是必要的。此外,连续模型和混合模型波速的数值比较表明,在弱趋化性情况下两者吻合良好,在强趋化性情况下定性一致。在细胞适应缓慢的情况下,我们检测到波的振荡行为,这无法用平均场近似来解释。