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木糖发酵酵母树状斯巴氏酵母UFMG-HM19.1AT的基因组序列草图

Draft Genome Sequence of the D-Xylose-Fermenting Yeast Spathaspora arborariae UFMG-HM19.1AT.

作者信息

Lobo Francisco P, Gonçalves Davi L, Alves Sergio L, Gerber Alexandra L, de Vasconcelos Ana Tereza R, Basso Luiz C, Franco Glória R, Soares Marco A, Cadete Raquel M, Rosa Carlos A, Stambuk Boris U

机构信息

Laboratório Multiusuário de Bioinformática, Embrapa Informática Agropecuária, Campinas, São Paulo, Brazil.

出版信息

Genome Announc. 2014 Jan 16;2(1):e01163-13. doi: 10.1128/genomeA.01163-13.

DOI:10.1128/genomeA.01163-13
PMID:24435867
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3894281/
Abstract

The draft genome sequence of the yeast Spathaspora arborariae UFMG-HM19.1A(T) (CBS 11463 = NRRL Y-48658) is presented here. The sequenced genome size is 12.7 Mb, consisting of 41 scaffolds containing a total of 5,625 predicted open reading frames, including many genes encoding enzymes and transporters involved in d-xylose fermentation.

摘要

本文展示了酵母树生斯巴哈酵母UFMG-HM19.1A(T)(CBS 11463 = NRRL Y-48658)的基因组序列草图。测序的基因组大小为12.7 Mb,由41个支架组成,总共包含5625个预测的开放阅读框,其中包括许多编码参与D-木糖发酵的酶和转运蛋白的基因。

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本文引用的文献

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Comparative genome analysis and gene finding in Candida species using CGOB.使用 CGOB 对念珠菌属物种进行比较基因组分析和基因预测。
Mol Biol Evol. 2013 Jun;30(6):1281-91. doi: 10.1093/molbev/mst042. Epub 2013 Mar 13.
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Spathaspora brasiliensis sp. nov., Spathaspora suhii sp. nov., Spathaspora roraimanensis sp. nov. and Spathaspora xylofermentans sp. nov., four novel (D)-xylose-fermenting yeast species from Brazilian Amazonian forest.巴西亚马逊森林中四种新型(D)-木糖发酵酵母,分别为 Spathaspora brasiliensis sp. nov.、Spathaspora suhii sp. nov.、Spathaspora roraimanensis sp. nov. 和 Spathaspora xylofermentans sp. nov.
Antonie Van Leeuwenhoek. 2013 Feb;103(2):421-31. doi: 10.1007/s10482-012-9822-z. Epub 2012 Oct 5.
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Diversity and physiological characterization of D-xylose-fermenting yeasts isolated from the Brazilian Amazonian Forest.从巴西亚马逊森林中分离出的 D-木糖发酵酵母的多样性和生理学特性。
PLoS One. 2012;7(8):e43135. doi: 10.1371/journal.pone.0043135. Epub 2012 Aug 13.
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Draft genome sequence of the yeast Pachysolen tannophilus CBS 4044/NRRL Y-2460.嗜单宁管囊酵母CBS 4044/NRRL Y-2460的基因组序列草图
Eukaryot Cell. 2012 Jun;11(6):827. doi: 10.1128/EC.00114-12.
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Cofermentation of glucose, xylose, and cellobiose by the beetle-associated yeast Spathaspora passalidarum.鞘孢酵母属真菌 Spathaspora passalidarum 对葡萄糖、木糖和纤维二糖的共发酵。
Appl Environ Microbiol. 2012 Aug;78(16):5492-500. doi: 10.1128/AEM.00374-12. Epub 2012 May 25.
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MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects.MAKER2:用于第二代基因组项目的注释流水线和基因组数据库管理工具。
BMC Bioinformatics. 2011 Dec 22;12:491. doi: 10.1186/1471-2105-12-491.
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Conversion of sugars present in rice hull hydrolysates into ethanol by Spathaspora arborariae, Saccharomyces cerevisiae, and their co-fermentations.利用枝顶孢霉、酿酒酵母及其共发酵将米糠水解液中的糖转化为乙醇。
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