嗜单宁管囊酵母CBS 4044/NRRL Y-2460的基因组序列草图
Draft genome sequence of the yeast Pachysolen tannophilus CBS 4044/NRRL Y-2460.
作者信息
Liu Xiaoying, Kaas Rolf Sommer, Jensen Peter Ruhdal, Workman Mhairi
机构信息
Center for Systems Microbiology, Department of Systems Biology, Matematiktorvet, Technical University of Denmark, Kongens Lyngby, Denmark.
出版信息
Eukaryot Cell. 2012 Jun;11(6):827. doi: 10.1128/EC.00114-12.
Abstract
A draft genome sequence of the yeast Pachysolen tannophilus CBS 4044/NRRL Y-2460 is presented. The organism has the potential to be developed as a cell factory for biorefineries due to its ability to utilize waste feedstocks. The sequenced genome size was 12,238,196 bp, consisting of 34 scaffolds. A total of 4,463 genes from 5,346 predicted open reading frames were annotated with function.
摘要
本文展示了嗜单宁管囊酵母CBS 4044/NRRL Y - 2460的基因组序列草图。由于该生物体具有利用废弃原料的能力，因此有潜力被开发成为生物精炼厂的细胞工厂。测序后的基因组大小为12,238,196碱基对，由34个支架组成。从5346个预测的开放阅读框中总共注释了4463个具有功能的基因。
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本文引用的文献
1
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Bioresour Technol. 2012 Jan;104:579-86. doi: 10.1016/j.biortech.2011.10.065. Epub 2011 Oct 28.
2
Potential utilization of sorghum field waste for fuel ethanol production employing Pachysolen tannophilus and Saccharomyces cerevisiae.利用 Pachysolen tannophilus 和酿酒酵母从高粱田废弃物中生产燃料乙醇的潜力。
Bioresour Technol. 2011 Feb;102(3):2788-92. doi: 10.1016/j.biortech.2010.11.097. Epub 2010 Nov 26.
3
De novo assembly of human genomes with massively parallel short read sequencing.利用大规模平行短读测序进行人类基因组从头组装。
Genome Res. 2010 Feb;20(2):265-72. doi: 10.1101/gr.097261.109. Epub 2009 Dec 17.
4
The ethanol tolerance of Pachysolen tannophilus in fermentation on xylose.塔宾曲霉在木糖发酵中的乙醇耐受性。
Appl Biochem Biotechnol. 2010 Jan;160(2):378-85. doi: 10.1007/s12010-008-8308-y. Epub 2008 Jul 24.
5
Pulsed-field gel electrophoresis of budding yeast chromosomes.出芽酵母染色体的脉冲场凝胶电泳
Methods Mol Biol. 2006;313:65-73. doi: 10.1385/1-59259-958-3:065.
6
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Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W309-12. doi: 10.1093/nar/gkh379.
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