Department of Pathobiology and Diagnostic Investigation, College of Veterinary Medicine, Michigan State University, East Lansing, MI 48824, USA.
Department of Fisheries and Wildlife, College of Agriculture and Natural Resources, Michigan State University, East Lansing, MI 48824, USA.
Int J Syst Evol Microbiol. 2014 May;64(Pt 5):1573-1579. doi: 10.1099/ijs.0.052373-0. Epub 2014 Jan 30.
Two strains (T68T and T62) of a Gram-reaction-negative, yellow-pigmented bacterium containing flexirubin-type pigments were recovered from the kidney of a cultured lake trout (Salvelinus namaycush) and necrotic fins of a brown trout (Salmo trutta) during disease surveillance in 2009. Both isolates possessed catalase and cytochrome oxidase activities and degraded multiple substrates (e.g. gelatin, casein, elastin and Tweens 20 and 80). The mean DNA G+C content of strain T68T was 34.1 mol%. 16S rRNA gene sequencing demonstrated that strains T68T and T62 had nearly identical sequences (≥99 % similarity) and placed the bacterium within the genus Chryseobacterium, where Chryseobacterium ginsenosidimutans THG 15T (97.8%), C. gregarium DSM 19109T (97.7%) and C. soldanellicola PSD1-4T (97.6%) were its closest relatives. Subsequent phylogenetic analyses using neighbour-joining, maximum-parsimony and Bayesian methodologies demonstrated that strains T68T and T62 formed a well-supported clade (bootstrap values of 100 and 97%; posterior probability 0.99) that was distinct from other species of the genus Chryseobacterium. The major fatty acids of strains T68T and T62 were characteristic of the genus Chryseobacterium and included iso-C15:0, summed feature 3 (C16:1ω6c and/or C16:1ω7c), iso-C17:0 3-OH, C16:0 and C16:0 3-OH. The mean DNA-DNA relatedness of strain T68T to C. ginsenosidimutans JCM 16719T and C. gregarium LMG 24952T was 24 and 21%, respectively. Based on the results from our polyphasic characterization, strains T68T and T62 represent a novel species of the genus Chryseobacterium, for which the name Chryseobacterium aahli sp. nov. is proposed. The type strain is T68T (=LMG 27338T=ATCC BAA-2540T). Emended descriptions of Chryseobacterium ginsenosidimutans and Chryseobacterium gregarium are also proposed.
从 2009 年疾病监测中养殖湖鳟鱼(Salvelinus namaycush)的肾脏和褐鳟鱼(Salmo trutta)的坏死鳍中分离到两株革兰氏反应阴性、黄色素产生菌(T68T 和 T62),它们都含有黄质体色素。这两株菌均具有过氧化氢酶和细胞色素氧化酶活性,并能降解多种底物(如明胶、酪蛋白、弹性蛋白和吐温 20 和 80)。菌株 T68T 的平均 DNA G+C 含量为 34.1 mol%。16S rRNA 基因测序表明,菌株 T68T 和 T62 的序列几乎完全相同(≥99%相似性),并将该细菌归入黄杆菌属,其中,该属的近缘种包括沙雷氏菌属人参亚种(Chryseobacterium ginsenosidimutans)THG 15T(97.8%)、胶澳黄杆菌(Chryseobacterium gregarium)DSM 19109T(97.7%)和索氏黄杆菌(Chryseobacterium soldanellicola)PSD1-4T(97.6%)。随后,使用邻接法、最大简约法和贝叶斯法进行的系统发育分析表明,菌株 T68T 和 T62 形成了一个具有强支持力的分支(自举值为 100 和 97%;后验概率为 0.99),与黄杆菌属的其他种明显不同。菌株 T68T 和 T62 的主要脂肪酸特征与黄杆菌属一致,包括异-C15:0、特征脂肪酸 3(C16:1ω6c 和/或 C16:1ω7c)、异-C17:0 3-OH、C16:0 和 C16:0 3-OH。菌株 T68T 与沙雷氏菌属人参亚种 JCM 16719T 和胶澳黄杆菌 LMG 24952T 的 DNA-DNA 相关性分别为 24%和 21%。基于多相特征分析的结果,菌株 T68T 和 T62 代表了黄杆菌属的一个新种,现命名为金黄杆菌(Chryseobacterium aahli)sp. nov.。模式菌株为 T68T(=LMG 27338T=ATCC BAA-2540T)。还对沙雷氏菌属人参亚种和胶澳黄杆菌的描述进行了修正。