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从患病鲶鱼肝脏中分离出sp. nov.(新种)。

Isolation of sp. nov., from liver of diseased catfish ().

作者信息

Oh Woo Taek, Jun Jin Woo, Giri Sib Sankar, Yun Saekil, Kim Hyoun Joong, Kim Sang Guen, Kim Sang Wha, Han Se Jin, Kwon Jun, Park Se Chang

机构信息

Laboratory of Aquatic Biomedicine, College of Veterinary Medicine and Research Institute for Veterinary Science, Seoul National University, Seoul 08826, Republic of Korea.

Department of Aquaculture, Korea National College of Agriculture and Fisheries, Jeonju 54874, Republic of Korea.

出版信息

Heliyon. 2020 Feb 22;6(2):e03454. doi: 10.1016/j.heliyon.2020.e03454. eCollection 2020 Feb.

Abstract

Yellow-pigmented, circular bacteria (strain SNU WT7) were isolated from the liver of moribund eastern catfish (). Our study focused on the taxonomic description of SNU WT7 using phylogenetic, phenotypic, and chemotaxonomic analyses. The 16S rRNA gene sequence of the SNU WT7 strain was highly similar to that of H38 (97.29% similarity), followed by P2K6 (97.22% similarity), while other species exhibited similarity values of less than 97.0%. The genome of strain SNU WT7 displayed average nucleotide identity and genome-to-genome distance values of 72.35% and 22.0%, respectively, which clearly indicated that the novel species was distant from the other species, with its closest relative being H38. Furthermore, the phenotypic characteristics, including acid production from glucose, D-fructose, lactose, and maltose, of strain SNU WT 7 differed from those of H38. The major polar lipid of the strain was phosphatidylethanolamine, and several unidentified aminolipids and lipids were also present. Similar to other species, the quinone system was composed mainly of MK-6. The genome of SNU WT7 is 2,690,367 bp with a G + C content of 43.6%. Taken together, our data indicate that the isolate SNU WT7 represents a novel species of the genus . Thus, we present the name sp. nov. for the novel type strain SNU WT7 (KCTC 72626, JCM 33707).

摘要

从濒死的东部鲶鱼肝脏中分离出黄色色素沉着的圆形细菌(菌株SNU WT7)。我们的研究聚焦于使用系统发育、表型和化学分类分析对SNU WT7进行分类学描述。SNU WT7菌株的16S rRNA基因序列与H38的序列高度相似(相似度为97.29%),其次是P2K6(相似度为97.22%),而其他物种的相似度值均低于97.0%。SNU WT7菌株的基因组平均核苷酸同一性和基因组到基因组距离值分别为72.35%和22.0%,这清楚地表明该新物种与其他物种亲缘关系较远,其最接近的亲缘种是H38。此外,SNU WT 7菌株的表型特征,包括从葡萄糖、D-果糖、乳糖和麦芽糖产酸情况,与H38不同。该菌株的主要极性脂是磷脂酰乙醇胺,还存在几种未鉴定的氨基脂和脂类。与其他物种相似,醌系统主要由MK-6组成。SNU WT7的基因组为2,690,367 bp,G + C含量为43.6%。综上所述,我们的数据表明分离株SNU WT7代表了属的一个新物种。因此,我们为新类型菌株SNU WT7(KCTC 72626,JCM 33707)提出新名称sp. nov. 。

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