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共转录RNA剪接简介

Introduction to cotranscriptional RNA splicing.

作者信息

Merkhofer Evan C, Hu Peter, Johnson Tracy L

机构信息

Molecular Biology Section, Division of Biological Sciences, University of California, San Diego, La Jolla, CA, USA.

出版信息

Methods Mol Biol. 2014;1126:83-96. doi: 10.1007/978-1-62703-980-2_6.

DOI:10.1007/978-1-62703-980-2_6
PMID:24549657
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4102251/
Abstract

The discovery that many intron-containing genes can be cotranscriptionally spliced has led to an increased understanding of how splicing and transcription are intricately intertwined. Cotranscriptional splicing has been demonstrated in a number of different organisms and has been shown to play roles in coordinating both constitutive and alternative splicing. The nature of cotranscriptional splicing suggests that changes in transcription can dramatically affect splicing, and new evidence suggests that splicing can, in turn, influence transcription. In this chapter, we discuss the mechanisms and consequences of cotranscriptional splicing and introduce some of the tools used to measure this process.

摘要

许多含内含子的基因能够进行共转录剪接这一发现,增进了我们对剪接与转录如何复杂交织的理解。共转录剪接已在多种不同生物中得到证实,并显示在协调组成型剪接和可变剪接中发挥作用。共转录剪接的性质表明,转录变化可显著影响剪接,而新证据表明,剪接反过来也可影响转录。在本章中,我们将讨论共转录剪接的机制和后果,并介绍一些用于测量这一过程的工具。

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Introduction to cotranscriptional RNA splicing.共转录RNA剪接简介
Methods Mol Biol. 2014;1126:83-96. doi: 10.1007/978-1-62703-980-2_6.
2
Cotranscriptional splicing efficiency differs dramatically between Drosophila and mouse.果蝇和小鼠中转录共剪接效率差异巨大。
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3
Nascent-seq indicates widespread cotranscriptional pre-mRNA splicing in Drosophila.Nascent-seq 表明果蝇中转录过程中广泛存在的前体 mRNA 剪接。
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Pre-mRNA splicing and its cotranscriptional connections.前体 mRNA 剪接及其共转录连接。
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Cotranscriptional coupling of splicing factor recruitment and precursor messenger RNA splicing in mammalian cells.哺乳动物细胞中剪接因子募集与前体信使核糖核酸剪接的共转录偶联
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Regulation of alternative pre-mRNA splicing.可变前体mRNA剪接的调控
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Co-transcriptional splicing facilitates transcription of gigantic genes.共转录剪接促进巨大基因的转录。
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The Role of mRNA Alternative Splicing in Macrophages Infected with : A Field Needing to Be Discovered.mRNA可变剪接在感染的巨噬细胞中的作用:一个有待探索的领域。 (你提供的原文中“infected with”后面缺少具体内容)
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3
A functional link between lariat debranching enzyme and the intron-binding complex is defective in non-photosensitive trichothiodystrophy.剪接体分支酶与内含子结合复合物之间的功能连接在非光敏感型先天性毛发硫营养不良中存在缺陷。
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Combining genetic constraint with predictions of alternative splicing to prioritize deleterious splicing in rare disease studies.结合遗传约束和选择性剪接预测,优先考虑罕见病研究中的有害剪接。
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Mutation in senataxin alters the mechanism of R-loop resolution in amyotrophic lateral sclerosis 4.基因突变导致肌萎缩性侧索硬化症 4 型 R 环解旋机制改变。
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Conditional depletion of transcriptional kinases Ctk1 and Bur1 and effects on co-transcriptional spliceosome assembly and pre-mRNA splicing.条件性敲除转录激酶 Ctk1 和 Bur1 及其对共转录剪接体组装和前体 mRNA 剪接的影响。
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Covering all your bases: incorporating intron signal from RNA-seq data.全面考虑:整合来自RNA测序数据的内含子信号。
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本文引用的文献

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Counting on co-transcriptional splicing.依靠共转录剪接。
F1000Prime Rep. 2013 Apr 2;5:9. doi: 10.12703/P5-9. Print 2013.
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Splicing kinetics and transcript release from the chromatin compartment limit the rate of Lipid A-induced gene expression.从染色质隔间中剪接动力学和转录本释放限制了脂多糖诱导基因表达的速度。
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CTD serine-2 plays a critical role in splicing and termination factor recruitment to RNA polymerase II in vivo.CTD 丝氨酸-2 在体内 RNA 聚合酶 II 的剪接和终止因子募集中起着关键作用。
Nucleic Acids Res. 2013 Feb 1;41(3):1591-603. doi: 10.1093/nar/gks1327. Epub 2012 Dec 28.
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The yeast cap binding complex modulates transcription factor recruitment and establishes proper histone H3K36 trimethylation during active transcription.酵母帽结合复合物在转录活跃期间调节转录因子的募集并建立适当的组蛋白 H3K36 三甲基化。
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The RNA polymerase II CTD coordinates transcription and RNA processing.RNA 聚合酶 II CTD 协调转录和 RNA 加工。
Genes Dev. 2012 Oct 1;26(19):2119-37. doi: 10.1101/gad.200303.112.
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Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs.亚细胞 RNA 片段的深度测序显示,在人类基因组中剪接主要是共转录的,但对于长非编码 RNA (lncRNAs)效率较低。
Genome Res. 2012 Sep;22(9):1616-25. doi: 10.1101/gr.134445.111.
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Post-transcriptional spliceosomes are retained in nuclear speckles until splicing completion.转录后剪接体在核斑点中保留,直到剪接完成。
Nat Commun. 2012;3:994. doi: 10.1038/ncomms1998.
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First exon length controls active chromatin signatures and transcription.第一外显子长度控制活性染色质特征和转录。
Cell Rep. 2012 Jul 26;2(1):62-8. doi: 10.1016/j.celrep.2012.05.019. Epub 2012 Jul 20.