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利用小角 X 射线散射研究球状蛋白质的自拥挤现象。

Self crowding of globular proteins studied by small-angle x-ray scattering.

机构信息

Department of Biology, University of Utah, Salt Lake City, Utah.

Department of Biology, University of Utah, Salt Lake City, Utah.

出版信息

Biophys J. 2014 Feb 18;106(4):895-904. doi: 10.1016/j.bpj.2013.12.004.

Abstract

Small-angle x-ray scattering (SAXS) was used to study the behavior of equine metmyoglobin (Mb) and bovine pancreatic trypsin inhibitor (BPTI) at concentrations up to 0.4 and 0.15 g/mL, respectively, in solutions also containing 50% D2O and 1 M urea. For both proteins, significant effects because of interference between x-rays scattered by different molecules (interparticle interference) were observed, indicating nonideal behavior at high concentrations. The experimental data were analyzed by comparison of the observed scattering profiles with those predicted by crystal structures of the proteins and a hard-sphere fluid model used to represent steric exclusion effects. The Mb scattering data were well fit by the hard-sphere model using a sphere radius of 18 Å, only slightly smaller than that estimated from the three-dimensional structure (20 Å). In contrast, the scattering profiles for BPTI in phosphate buffer displayed substantially less pronounced interparticle interference than predicted by the hard-sphere model and the radius estimated from the known structure of the protein (15 Å). Replacing the phosphate buffer with 3-(N-morpolino)propane sulfonic acid (MOPS) led to increased interparticle interference, consistent with a larger effective radius and suggesting that phosphate ions may mediate attractive intermolecular interactions, as observed in some BPTI crystal structures, without the formation of stable oligomers. The scattering data were also used to estimate second virial coefficients for the two proteins: 2.0 ×10(-4) cm(3)mol/g(2) for Mb in phosphate buffer, 1.6 ×10(-4) cm(3)mol/g(2) for BPTI in phosphate buffer and 9.2 ×10(-4) cm(3)mol/g(2) for BPTI in MOPS. The results indicate that the behavior of Mb, which is nearly isoelectric under the conditions used, is well described by the hard-sphere model, but that of BPTI is considerably more complex and is likely influenced by both repulsive and attractive electrostatic interactions. The hard-sphere model may be a generally useful tool for the analysis of small-angle scattering data from concentrated macromolecular solutions.

摘要

小角 X 射线散射(SAXS)被用于研究马肌红蛋白(Mb)和牛胰蛋白酶抑制剂(BPTI)在浓度高达 0.4 和 0.15 g/mL 的情况下的行为,分别在含有 50%D2O 和 1 M 脲的溶液中。对于这两种蛋白质,由于不同分子散射的 X 射线之间的干扰(粒子间干扰)而观察到显著的影响,表明在高浓度下行为非理想。通过将观察到的散射轮廓与蛋白质的晶体结构和用于表示空间排斥效应的硬球流体模型的预测进行比较,对实验数据进行了分析。使用半径为 18Å 的硬球模型对 Mb 散射数据进行了很好的拟合,仅略小于从三维结构估计的半径(20Å)。相比之下,用磷酸盐缓冲液表示的 BPTI 的散射曲线与硬球模型和从已知蛋白质结构估计的半径(15Å)预测的相比,粒子间干扰明显较小。用 3-(N-吗啉基)丙磺酸(MOPS)代替磷酸盐缓冲液会导致粒子间干扰增加,这与较大的有效半径一致,并表明磷酸离子可能介导如一些 BPTI 晶体结构中观察到的那样的分子间吸引力相互作用,而不会形成稳定的寡聚物。散射数据还用于估计两种蛋白质的第二维里系数:在磷酸盐缓冲液中,Mb 为 2.0×10(-4)cm(3)mol/g(2),在磷酸盐缓冲液中,BPTI 为 1.6×10(-4)cm(3)mol/g(2),在 MOPS 中,BPTI 为 9.2×10(-4)cm(3)mol/g(2)。结果表明,在使用条件下几乎等电的 Mb 行为很好地由硬球模型描述,但 BPTI 的行为要复杂得多,可能受到排斥和吸引力静电相互作用的影响。硬球模型可能是分析高浓度大分子溶液小角散射数据的一种普遍有用的工具。

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