Brulle Franck, Bernard Fabien, Vandenbulcke Franck, Cuny Damien, Dumez Sylvain
Laboratoire des Sciences Végétales et Fongiques, Faculté des Sciences Pharmaceutiques et Biologiques, Université Lille Nord de France, EA 4483, Lille 2, B.P. 83, 59006, Lille Cedex, France.
Ecotoxicology. 2014 Apr;23(3):459-71. doi: 10.1007/s10646-014-1209-7. Epub 2014 Feb 25.
Real-time quantitative PCR is nowadays a standard method to study gene expression variations in various samples and experimental conditions. However, to interpret results accurately, data normalization with appropriate reference genes appears to be crucial. The present study describes the identification and the validation of suitable reference genes in Brassica oleracea leaves. Expression stability of eight candidates was tested following drought and cold abiotic stresses by using three different softwares (BestKeeper, NormFinder and geNorm). Four genes (BolC.TUB6, BolC.SAND1, BolC.UBQ2 and BolC.TBP1) emerged as the most stable across the tested conditions. Further gene expression analysis of a drought- and a cold-responsive gene (BolC.DREB2A and BolC.ELIP, respectively), confirmed the stability and the reliability of the identified reference genes when used for normalization in the leaves of B. oleracea. These four genes were finally tested upon a benzene exposure and all appeared to be useful reference genes along this toxicological condition. These results provide a good starting point for future studies involving gene expression measurement on leaves of B. oleracea exposed to environmental modifications.
实时定量PCR如今是研究各种样本和实验条件下基因表达变化的标准方法。然而,为了准确解释结果,使用合适的内参基因进行数据归一化似乎至关重要。本研究描述了甘蓝叶片中合适内参基因的鉴定和验证。通过使用三种不同软件(BestKeeper、NormFinder和geNorm),在干旱和寒冷非生物胁迫后测试了八个候选基因的表达稳定性。四个基因(BolC.TUB6、BolC.SAND1、BolC.UBQ2和BolC.TBP1)在测试条件下表现出最稳定。对一个干旱响应基因和一个冷响应基因(分别为BolC.DREB2A和BolC.ELIP)的进一步基因表达分析,证实了所鉴定的内参基因在用于甘蓝叶片归一化时的稳定性和可靠性。这四个基因最终在苯暴露条件下进行了测试,并且在这种毒理学条件下似乎都是有用的内参基因。这些结果为未来涉及对暴露于环境变化的甘蓝叶片进行基因表达测量的研究提供了一个良好的起点。