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本文引用的文献

1
Chaperoning the histone H3 family.陪伴组蛋白H3家族。
Biochim Biophys Acta. 2013 Mar-Apr;1819(3-4):230-237. doi: 10.1016/j.bbagrm.2011.08.009.
2
Histone variants and epigenetic inheritance.组蛋白变体与表观遗传继承。
Biochim Biophys Acta. 2013 Mar-Apr;1819(3-4):222-229. doi: 10.1016/j.bbagrm.2011.06.007.
3
Endogenous mammalian histone H3.3 exhibits chromatin-related functions during development.内源性哺乳动物组蛋白 H3.3 在发育过程中表现出与染色质相关的功能。
Epigenetics Chromatin. 2013 Apr 9;6(1):7. doi: 10.1186/1756-8935-6-7.
4
Structural insight into substrate recognition by histone demethylase LSD2/KDM1b.组蛋白去甲基化酶LSD2/KDM1b对底物识别的结构洞察。
Cell Res. 2013 Feb;23(2):306-9. doi: 10.1038/cr.2013.17. Epub 2013 Jan 29.
5
Nap1 regulates proper CENP-B binding to nucleosomes.Nap1 调控着 CENP-B 与核小体的正确结合。
Nucleic Acids Res. 2013 Mar 1;41(5):2869-80. doi: 10.1093/nar/gks1464. Epub 2013 Jan 15.
6
LSD2/KDM1B and its cofactor NPAC/GLYR1 endow a structural and molecular model for regulation of H3K4 demethylation.LSD2/KDM1B 及其辅助因子 NPAC/GLYR1 为 H3K4 去甲基化的调控提供了结构和分子模型。
Mol Cell. 2013 Feb 7;49(3):558-70. doi: 10.1016/j.molcel.2012.11.019. Epub 2012 Dec 20.
7
Transcription in the absence of histone H3.2 and H3K4 methylation.在缺乏组蛋白 H3.2 和 H3K4 甲基化的情况下进行转录。
Curr Biol. 2012 Dec 4;22(23):2253-7. doi: 10.1016/j.cub.2012.10.008. Epub 2012 Nov 8.
8
Genomic amplification and a role in drug-resistance for the KDM5A histone demethylase in breast cancer.KDM5A组蛋白去甲基化酶在乳腺癌中的基因组扩增及其在耐药性中的作用。
Am J Transl Res. 2012;4(3):247-56. Epub 2012 Jul 22.
9
Anterior-posterior differences in HoxD chromatin topology in limb development.肢体发育中 HoxD 染色质拓扑的前后差异。
Development. 2012 Sep;139(17):3157-67. doi: 10.1242/dev.081174.
10
Loss of ATRX, genome instability, and an altered DNA damage response are hallmarks of the alternative lengthening of telomeres pathway.ATRX 缺失、基因组不稳定和 DNA 损伤反应改变是端粒的替代延长途径的特征。
PLoS Genet. 2012;8(7):e1002772. doi: 10.1371/journal.pgen.1002772. Epub 2012 Jul 19.

染色质动力学:发育过程中和癌症中的 H3K4 甲基化和 H3 变体替换。

Chromatin dynamics: H3K4 methylation and H3 variant replacement during development and in cancer.

机构信息

Epigenetics and Cancer Research Laboratory, Biochemistry and Molecular Biology Group, Department of Life Science, National Institute of Technology, Rourkela, Odisha, 769008, India.

出版信息

Cell Mol Life Sci. 2014 Sep;71(18):3439-63. doi: 10.1007/s00018-014-1605-4. Epub 2014 Mar 28.

DOI:10.1007/s00018-014-1605-4
PMID:24676717
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11113154/
Abstract

The dynamic nature of chromatin and its myriad modifications play a crucial role in gene regulation (expression and repression) during development, cellular survival, homeostasis, ageing, and apoptosis/death. Histone 3 lysine 4 methylation (H3K4 methylation) catalyzed by H3K4 specific histone methyltransferases is one of the more critical chromatin modifications that is generally associated with gene activation. Additionally, the deposition of H3 variant(s) in conjunction with H3K4 methylation generates an intricately reliable epigenetic regulatory circuit that guides transcriptional activity in normal development and homeostasis. Consequently, alterations in this epigenetic circuit may trigger disease development. The mechanistic relationship between H3 variant deposition and H3K4 methylation during normal development has remained foggy. However, recent investigations in the field of chromatin dynamics in various model organisms, tumors, cancer tissues, and cell lines cultured without and with therapeutic agents, as well as from model reconstituted chromatins reveal that there may be different subsets of chromatin assemblage with specific patterns of histone replacement executing similar functions. In this light, we attempt to explain the intricate control system that maintains chromatin structure and dynamics during normal development as well as during tumor development and cancer progression in this review. Our focus is to highlight the contribution of H3K4 methylation-histone variant crosstalk in regulating chromatin architecture and subsequently its function.

摘要

染色质的动态性质及其众多修饰在基因调控(表达和抑制)中起着至关重要的作用,包括发育、细胞存活、内稳态、衰老以及细胞凋亡/死亡。由 H3K4 特异性组蛋白甲基转移酶催化的组蛋白 3 赖氨酸 4 甲基化 (H3K4 methylation) 是更关键的染色质修饰之一,通常与基因激活相关。此外,H3 变体的沉积与 H3K4 甲基化相结合,生成了一个错综复杂的可靠表观遗传调控回路,指导正常发育和内稳态中的转录活性。因此,该表观遗传回路的改变可能会引发疾病的发展。在正常发育过程中,H3 变体沉积与 H3K4 甲基化之间的机制关系仍然模糊不清。然而,最近在各种模式生物、肿瘤、癌组织和无治疗剂及有治疗剂培养的细胞系中的染色质动力学领域的研究表明,可能存在具有特定组蛋白替换模式的不同子集的染色质组装体,执行相似的功能。有鉴于此,我们试图在本综述中解释在正常发育以及肿瘤发生和癌症进展过程中维持染色质结构和动力学的复杂控制系统。我们的重点是强调 H3K4 甲基化-组蛋白变体相互作用在调节染色质结构及其功能方面的贡献。