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突变适应性效应的变异性可防止大型准种群体中出现完全致死性转变。

Variability in mutational fitness effects prevents full lethal transitions in large quasispecies populations.

作者信息

Sardanyés Josep, Simó Carles, Martínez Regina, Solé Ricard V, Elena Santiago F

机构信息

1] ICREA-Complex Systems Lab, Department of Experimental and Health Sciences, Universitat Pompeu Fabra, Dr. Aiguader 88, 08003 Barcelona, Spain [2] Institut de Biologia Evolutiva (CSIC-Universitat Pompeu Fabra), Passeig Maritim de la Barceloneta 37, 08003 Barcelona, Spain.

Departament de Matemàtica Aplicada i Anàlisi (Universitat de Barcelona), Gran Via de les Corts Catalanes 585, 08007 Barcelona, Spain.

出版信息

Sci Rep. 2014 Apr 9;4:4625. doi: 10.1038/srep04625.

Abstract

The distribution of mutational fitness effects (DMFE) is crucial to the evolutionary fate of quasispecies. In this article we analyze the effect of the DMFE on the dynamics of a large quasispecies by means of a phenotypic version of the classic Eigen's model that incorporates beneficial, neutral, deleterious, and lethal mutations. By parameterizing the model with available experimental data on the DMFE of Vesicular stomatitis virus (VSV) and Tobacco etch virus (TEV), we found that increasing mutation does not totally push the entire viral quasispecies towards deleterious or lethal regions of the phenotypic sequence space. The probability of finding regions in the parameter space of the general model that results in a quasispecies only composed by lethal phenotypes is extremely small at equilibrium and in transient times. The implications of our findings can be extended to other scenarios, such as lethal mutagenesis or genomically unstable cancer, where increased mutagenesis has been suggested as a potential therapy.

摘要

突变适应度效应的分布(DMFE)对于准种的进化命运至关重要。在本文中,我们通过经典艾根模型的表型版本来分析DMFE对大型准种动态的影响,该模型纳入了有益、中性、有害和致死突变。通过用关于水疱性口炎病毒(VSV)和烟草蚀纹病毒(TEV)的DMFE的现有实验数据对模型进行参数化,我们发现增加突变并不会完全将整个病毒准种推向表型序列空间的有害或致死区域。在平衡态和瞬态时,在通用模型的参数空间中找到仅由致死表型组成的准种区域的概率极小。我们研究结果的影响可以扩展到其他情形,例如致死诱变或基因组不稳定的癌症,在这些情形中,增加诱变已被提议作为一种潜在的治疗方法。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1e50/3980229/46fb333afb52/srep04625-f1.jpg

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