• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

基于类鼻疽伯克霍尔德菌PilO2(Bp)S-SAD晶体结构重新定义PF06864 Pfam家族。

Redefining the PF06864 Pfam family based on Burkholderia pseudomallei PilO2(Bp) S-SAD crystal structure.

作者信息

Lassaux Patricia, Conchillo-Solé Oscar, Manjasetty Babu A, Yero Daniel, Perletti Lucia, Belrhali Hassan, Daura Xavier, Gourlay Louise J, Bolognesi Martino

机构信息

Department of Biosciences, University of Milan, Milan, Italy.

Institute of Biotechnology and Biomedicine, Universitat Autònoma de Barcelona, Bellaterra, Spain.

出版信息

PLoS One. 2014 Apr 11;9(4):e94981. doi: 10.1371/journal.pone.0094981. eCollection 2014.

DOI:10.1371/journal.pone.0094981
PMID:24728008
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3984277/
Abstract

Type IV pili are surface-exposed filaments and bacterial virulence factors, represented by the Tfpa and Tfpb types, which assemble via specific machineries. The Tfpb group is further divided into seven variants, linked to heterogeneity in the assembly machineries. Here we focus on PilO2(Bp), a protein component of the Tfpb R64 thin pilus variant assembly machinery from the pathogen Burkholderia pseudomallei. PilO2(Bp) belongs to the PF06864 Pfam family, for which an improved definition is presented based on newly derived Hidden Markov Model (HMM) profiles. The 3D structure of the N-terminal domain of PilO2(Bp) (N-PilO2(Bp)), here reported, is the first structural representative of the PF06864 family. N-PilO2(Bp) presents an actin-like ATPase fold that is shown to be present in BfpC, a different variant assembly protein; the new HMM profiles classify BfpC as a PF06864 member. Our results provide structural insight into the PF06864 family and on the Type IV pili assembly machinery.

摘要

IV型菌毛是表面暴露的细丝和细菌毒力因子,以Tfpa和Tfpb类型为代表,它们通过特定的机制组装。Tfpb组进一步分为七个变体,这与组装机制的异质性有关。在这里,我们聚焦于PilO2(Bp),它是来自病原体类鼻疽伯克霍尔德菌的Tfpb R64细菌毛变体组装机制的一种蛋白质成分。PilO2(Bp)属于PF06864 Pfam家族,基于新推导的隐马尔可夫模型(HMM)概况给出了该家族的改进定义。本文报道的PilO2(Bp) N端结构域(N-PilO2(Bp))的三维结构是PF06864家族的首个结构代表。N-PilO2(Bp)呈现出一种肌动蛋白样ATP酶折叠结构,在另一种不同的变体组装蛋白BfpC中也有发现;新的HMM概况将BfpC归类为PF06864家族成员。我们的结果为PF06864家族以及IV型菌毛组装机制提供了结构上的见解。

相似文献

1
Redefining the PF06864 Pfam family based on Burkholderia pseudomallei PilO2(Bp) S-SAD crystal structure.基于类鼻疽伯克霍尔德菌PilO2(Bp)S-SAD晶体结构重新定义PF06864 Pfam家族。
PLoS One. 2014 Apr 11;9(4):e94981. doi: 10.1371/journal.pone.0094981. eCollection 2014.
2
Production and purification of Burkholderia pseudomallei BipD protein.伯克霍尔德菌假鼻疽菌素BipD蛋白的生产与纯化。
Southeast Asian J Trop Med Public Health. 2008 Jan;39(1):109-14.
3
A novel FK-506-binding-like protein that lacks peptidyl-prolyl isomerase activity is involved in intracellular infection and in vivo virulence of Burkholderia pseudomallei.一种新型 FK-506 结合样蛋白,缺乏肽基脯氨酰顺反异构酶活性,参与伯克霍尔德菌假单胞菌的细胞内感染和体内毒力。
Microbiology (Reading). 2011 Sep;157(Pt 9):2629-2638. doi: 10.1099/mic.0.049163-0. Epub 2011 Jun 16.
4
A second type III secretion system in Burkholderia pseudomallei: who is the real culprit?
Microbiology (Reading). 2001 Dec;147(Pt 12):3197-9. doi: 10.1099/00221287-147-12-3197.
5
In silico prediction of host-pathogen protein interactions in melioidosis pathogen Burkholderia pseudomallei and human reveals novel virulence factors and their targets.通过计算机模拟预测类鼻疽病原体伯克霍尔德菌与人类之间的宿主-病原体蛋白相互作用,揭示了新的毒力因子及其靶点。
Brief Bioinform. 2021 May 20;22(3). doi: 10.1093/bib/bbz162.
6
Elucidation of the regulon and cis-acting regulatory element of HrpB, the AraC-type regulator of a plant pathogen-like type III secretion system in Burkholderia pseudomallei.阐明植物病原菌样 III 型分泌系统 AraC 型调控子 HrpB 的调控组和顺式作用调控元件在伯克霍尔德氏菌假单胞菌中的作用。
J Bacteriol. 2011 Apr;193(8):1991-2001. doi: 10.1128/JB.01379-10. Epub 2011 Feb 18.
7
The chemical arsenal of Burkholderia pseudomallei is essential for pathogenicity.类鼻疽伯克霍尔德菌的化学武器库对致病性至关重要。
J Am Chem Soc. 2014 Jul 2;136(26):9484-90. doi: 10.1021/ja504617n. Epub 2014 Jun 24.
8
DBSecSys 2.0: a database of Burkholderia mallei and Burkholderia pseudomallei secretion systems.DBSecSys 2.0:一个关于鼻疽伯克霍尔德菌和类鼻疽伯克霍尔德菌分泌系统的数据库。
BMC Bioinformatics. 2016 Sep 20;17:387. doi: 10.1186/s12859-016-1242-z.
9
The guanine-nucleotide-exchange factor BopE from Burkholderia pseudomallei adopts a compact version of the Salmonella SopE/SopE2 fold and undergoes a closed-to-open conformational change upon interaction with Cdc42.来自类鼻疽伯克霍尔德菌的鸟嘌呤核苷酸交换因子BopE采用了沙门氏菌SopE/SopE2折叠的紧凑形式,并在与Cdc42相互作用时经历从封闭到开放的构象变化。
Biochem J. 2008 May 1;411(3):485-93. doi: 10.1042/BJ20071546.
10
Genomic patterns of pathogen evolution revealed by comparison of Burkholderia pseudomallei, the causative agent of melioidosis, to avirulent Burkholderia thailandensis.通过将类鼻疽病病原体伪鼻疽伯克霍尔德菌与无毒力的泰国伯克霍尔德菌进行比较所揭示的病原体进化基因组模式。
BMC Microbiol. 2006 May 26;6:46. doi: 10.1186/1471-2180-6-46.

引用本文的文献

1
Boosting of post-exposure human T-cell and B-cell recall responses in vivo by Burkholderia pseudomallei-related proteins.伯克霍尔德菌属假鼻疽杆菌相关蛋白在体内增强暴露后人类T细胞和B细胞的回忆反应
Immunology. 2017 May;151(1):98-109. doi: 10.1111/imm.12709. Epub 2017 Feb 9.
2
Crystallization and preliminary crystallographic studies of the hypothetical protein BPSL1038 from Burkholderia pseudomallei.来自类鼻疽伯克霍尔德菌的假定蛋白BPSL1038的结晶及初步晶体学研究
Acta Crystallogr F Struct Biol Commun. 2014 Dec 1;70(Pt 12):1697-700. doi: 10.1107/S2053230X14025278. Epub 2014 Nov 28.
3
Melioidosis: molecular aspects of pathogenesis.

本文引用的文献

1
Processing of X-ray diffraction data collected in oscillation mode.振荡模式下收集的X射线衍射数据的处理。
Methods Enzymol. 1997;276:307-26. doi: 10.1016/S0076-6879(97)76066-X.
2
Activities at the Universal Protein Resource (UniProt).通用蛋白质资源库(UniProt)的活动。
Nucleic Acids Res. 2014 Jan;42(Database issue):D191-8. doi: 10.1093/nar/gkt1140. Epub 2013 Nov 18.
3
Neglected but amazingly diverse type IVb pili.被忽视但令人惊讶的多样的 IVb 型菌毛。
类鼻疽:发病机制的分子层面
Expert Rev Anti Infect Ther. 2014 Dec;12(12):1487-99. doi: 10.1586/14787210.2014.970634. Epub 2014 Oct 14.
Res Microbiol. 2012 Nov-Dec;163(9-10):659-73. doi: 10.1016/j.resmic.2012.10.015. Epub 2012 Oct 25.
4
Assignment of protein sequences to existing domain and family classification systems: Pfam and the PDB.将蛋白质序列分配到现有的域和家族分类系统:Pfam 和 PDB。
Bioinformatics. 2012 Nov 1;28(21):2763-72. doi: 10.1093/bioinformatics/bts533. Epub 2012 Aug 31.
5
Pseudomonas aeruginosa twitching motility: type IV pili in action.铜绿假单胞菌的菌毛运动:IV 型菌毛的作用。
Annu Rev Microbiol. 2012;66:493-520. doi: 10.1146/annurev-micro-092611-150055. Epub 2012 Jul 2.
6
Structure of an essential type IV pilus biogenesis protein provides insights into pilus and type II secretion systems.一种必需的 IV 型菌毛生物发生蛋白的结构为菌毛和 II 型分泌系统提供了新的见解。
J Mol Biol. 2012 May 25;419(1-2):110-24. doi: 10.1016/j.jmb.2012.02.041. Epub 2012 Mar 1.
7
Structure of the pilus assembly protein TadZ from Eubacterium rectale: implications for polar localization.直肠真杆菌菌毛装配蛋白 TadZ 的结构:对极定位的影响。
Mol Microbiol. 2012 Feb;83(4):712-27. doi: 10.1111/j.1365-2958.2011.07954.x. Epub 2012 Jan 18.
8
The Pfam protein families database.Pfam 蛋白质家族数据库。
Nucleic Acids Res. 2012 Jan;40(Database issue):D290-301. doi: 10.1093/nar/gkr1065. Epub 2011 Nov 29.
9
SignalP 4.0: discriminating signal peptides from transmembrane regions.信号肽预测工具SignalP 4.0:区分信号肽与跨膜区域。
Nat Methods. 2011 Sep 29;8(10):785-6. doi: 10.1038/nmeth.1701.
10
Representative proteomes: a stable, scalable and unbiased proteome set for sequence analysis and functional annotation.代表性蛋白质组:用于序列分析和功能注释的稳定、可扩展且无偏的蛋白质组集。
PLoS One. 2011 Apr 27;6(4):e18910. doi: 10.1371/journal.pone.0018910.